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docs: 📝 moved logic into algorithm.csv #190

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docs: 📝 moved logic into algorithm.csv #190

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e5289cb
docs: :memo: finish moving logic over into `algorithm.csv`
lwjohnst86 Feb 5, 2025
4e1d4b5
chore: :bento: regenerated `.rda` files
lwjohnst86 Feb 5, 2025
a22c43c
docs: :pencil2: small text edits for appearance/consistency
lwjohnst86 Feb 10, 2025
85c0d45
docs: :pencil2: oops, need to use quotes around these cells
lwjohnst86 Feb 10, 2025
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4 changes: 2 additions & 2 deletions data-raw/algorithm.csv
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Expand Up @@ -5,8 +5,8 @@ lpr_diag,lpr2,Relevant LPR2 diagnoses codes,c_diag =~ '^(DO0[0-6]|DO8[0-4]|DZ3[3
lpr_diag,lpr2_has_t1d,LPR2 diagnoses codes for T1D,c_diag =~ '^(DE10|249)',
lpr_diag,lpr2_has_t2d,LPR2 diagnoses codes for T2D,c_diag =~ '^(DE11|250)',
lpr_diag,lpr2_has_pregnancy_event,LPR2 diagnoses codes for pregnancy-related outcomes,c_diag =~ '^(DO0[0-6]|DO8[0-4]|DZ3[37])',These are recorded pregnancy endings like live births and miscarriages.
lpr_adm,lpr2_is_endocrinology_department,LPR2 endocrinology department,"na_if(c_spec, !(c_spec %in% 8:30)) == 8","True is when the department is endocrinology, false is when it is other medical departments, and missing is all other cases."
kontakter,lpr3_is_endocrinology_department,LPR3 endocrinology department,"na_if(hovedspeciale_ans, !(hovedspeciale_ans %in% c('medicinsk endokrinologi', 'blandet medicin og kirurgi', 'intern medicin', 'geriatri', 'hepatologi', 'hæmatologi', 'infektionsmedicin', 'kardiologi', 'medicinsk allergologi', 'medicinsk gastroenterologi', 'medicinsk lungesygdomme', 'nefrologi', 'reumatologi', 'palliativ medicin', 'akut medicin', 'dermato-venerologi', 'neurologi', 'onkologi', 'fysiurgi', 'tropemedicin'))) == 'medicinsk endokrinologi'","True is when the department is endocrinology, false is when it is other medical departments, and missing is all other cases."
lpr_adm,lpr2_is_endocrinology_department,LPR2 endocrinology department,"na_if(c_spec, !(c_spec %in% 8:30)) == 8",`TRUE` when the department is endocrinology,`FALSE` when it is other medical departments, and missing is all other cases.
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kontakter,lpr3_is_endocrinology_department,LPR3 endocrinology department,"na_if(hovedspeciale_ans, !(hovedspeciale_ans %in% c('medicinsk endokrinologi', 'blandet medicin og kirurgi', 'intern medicin', 'geriatri', 'hepatologi', 'hæmatologi', 'infektionsmedicin', 'kardiologi', 'medicinsk allergologi', 'medicinsk gastroenterologi', 'medicinsk lungesygdomme', 'nefrologi', 'reumatologi', 'palliativ medicin', 'akut medicin', 'dermato-venerologi', 'neurologi', 'onkologi', 'fysiurgi', 'tropemedicin'))) == 'medicinsk endokrinologi'",`TRUE` when the department is endocrinology, `FALSE` when it is other medical departments, and missing in all other cases.
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diagnoser,lpr3,Relevant LPR3 diagnoses codes,diagnosekode =~ '^(DO0[0-6]|DO8[0-4]|DZ3[37]|DE1[0-4])' AND (diagnosetype == 'A' OR diagnosetype == 'B') AND (senere_afkraeftet == "Nej"),'A' `diagnosekode` means primary diagnosis and `senere_afkraeftet` means diagnosis was later retracted.
diagnoser,lpr3_has_t1d,LPR3 diagnoses codes for T1D,diagnosekode =~ '^(DE10)',
diagnoser,lpr3_has_t2d,LPR3 diagnoses codes for T2D,diagnosekode =~ '^(DE11)',
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