Obsoleted 3,8-divinyl protochlorophyllide a 8-vinyl reductase activit…

[raymond91125]

…y, #29701

[github-actions]

Here's a diff of how these changes impact the classified ontology:

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2025-02-19/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-master.owl/reasoned.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/go.owl
• Version IRI: http://purl.obolibrary.org/obo/go/releases/2025-02-19/go.owl
• Loaded from: file:/__w/go-ontology/go-ontology/src/ontology/../../reasoned-pr.owl/reasoned.owl

Ontology imports

Ontology annotations

3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity http://purl.obolibrary.org/obo/GO_0033728

Removed

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity label "divinyl chlorophyllide a 8-vinyl-reductase activity"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "MetaCyc:RXN-5286"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "RHEA:14449"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity definition "Catalysis of the reaction: chlorophyllide a + NADP+ = divinyl chlorophyllide a + NADPH + H+."

  • database_cross_reference "EC:1.3.1.75"

Added

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity has_exact_synonym "3,8-divinyl protochlorophyllide a 8-vinyl reductase activity"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity term tracker item "https://github.com/geneontology/go-ontology/issues/29701"^^[anyURI](http://www.w3.org/2001/XMLSchema#anyURI)

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity has_exact_synonym "3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activit"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity definition "Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+, and chlorophyllide a + NADP+ = 3,8-divinyl chlorophyllide a + NADPH + H+."

  • database_cross_reference "EC:1.3.1.75"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "MetaCyc:RXN1F-72"

  • source "skos:narrowMatch"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "MetaCyc:RXN-5286"

  • source "skos:narrowMatch"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "RHEA:14449"

  • source "skos:narrowMatch"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity label "3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity"

• 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "RHEA:48884"

  • source "skos:narrowMatch"

obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity http://purl.obolibrary.org/obo/GO_0051744

Removed

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "RHEA:48884"

  • source "skos:exactMatch"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity label "3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity definition "Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+."

  • database_cross_reference "RHEA:48884"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity has_broad_synonym "3,8-divinyl protochlorophyllide a 8-vinyl reductase activity"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity database_cross_reference "MetaCyc:RXN1F-72"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf has participant some NADPH(4-)

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf has participant some protochlorophyllide(2-)

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf has participant some 2,4-divinyl protochlorophyllide a(2-)

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf has participant some NADP(3-)

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf has participant some hydron

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity SubClassOf oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

Added

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity term replaced by "GO:0033728"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity label "obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity deprecated true

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity definition "OBSOLETE. Catalysis of the reaction: protochlorophyllide a + NADP+ = 3,8-divinyl protochlorophyllide a + NADPH + H+."

  • database_cross_reference "GOC:rynl"

• obsolete 3,8-divinyl protochlorophyllide a 8-vinyl-reductase (NADPH) activity comment "The reason for obsoletion is that this term is equivalent to divinyl chlorophyllide a 8-vinyl-reductase activity.
  ."