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Pull requests: NVIDIA/bionemo-framework

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Pull requests list

[cye/subpack-gpu-testing] Add GPU runner to testing job.
#776 opened Mar 21, 2025 by cspades Loading…
@cspades
8
Initial work on amplify infer script
#775 opened Mar 21, 2025 by pstjohn • Draft
1
Speed up Geneformer pydantic recipe and training tests INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#774 opened Mar 21, 2025 by skothenhill-nv Loading…
6 of 9 tasks
11
PoC: new Github CI test labels and markers
#771 opened Mar 20, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
2
Pbinder/auto resume
#766 opened Mar 19, 2025 by polinabinder1 • Draft
3
Jwilber/cleanup docs examples dir documentation Improvements or additions to documentation INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline SKIP_CI Completely skips the CI pipeline
#765 opened Mar 17, 2025 by jwilber Loading…
2
Bump 3rdparty/NeMo from cc8ff45 to 6c22985 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#763 opened Mar 17, 2025 by dependabot bot Loading…
Bump 3rdparty/Megatron-LM from 62529f1 to b428f80 dependencies Pull requests that update a dependency file submodules Pull requests that update Submodules code
#762 opened Mar 17, 2025 by dependabot bot Loading…
Geneformer gene embedding calculation
#741 opened Mar 10, 2025 by jyin-bst Loading…
2 of 9 tasks
2
[do not merge]inference with protein string on single gpu
#714 opened Mar 3, 2025 by yzhang123 • Draft
9 tasks
2
Correct Shape of scdl output matirx
#708 opened Feb 27, 2025 by Intron7 Loading…
10
[WIP] Blackwell compatibility changes
#707 opened Feb 27, 2025 by trvachov Loading…
9 tasks
1
add sample combiner for multi-GPU inference
#691 opened Feb 17, 2025 by Intron7 Loading…
2 of 9 tasks
Allow for multiline copyright licenses SKIP_CI Completely skips the CI pipeline
#690 opened Feb 14, 2025 by jwilber Loading…
1 of 9 tasks
2
CI hotfix: NGC access INCLUDE_NOTEBOOKS_TESTS Add Jupyter notebook validation to the CI pipeline INCLUDE_SLOW_TESTS Add unit tests marked as slow to CI pipeline
#683 opened Feb 7, 2025 by dorotat-nv Loading…
4 of 9 tasks
@dorotat-nv
3
draft: adding FIXME/XFAIL issue linter to pre commit hook SKIP_CI Completely skips the CI pipeline
#681 opened Feb 6, 2025 by dorotat-nv Loading…
1 of 9 tasks
remove development target, install all packages in postcreatecommand
#679 opened Feb 5, 2025 by pstjohn Loading…
3
Patchfix ARM rsync vulnerability in container, bump release version.
#663 opened Jan 28, 2025 by trvachov Loading…
5 of 9 tasks
3
Possible changes for biobert config changes
#655 opened Jan 24, 2025 by pstjohn • Draft
1
ESM2 Interactive inference
#654 opened Jan 24, 2025 by farhadrgh • Draft
9 tasks
9
tflops callback and flag: ESM2
#633 opened Jan 22, 2025 by dorotat-nv Loading…
1 of 9 tasks
@dorotat-nv
Loss disagreement between TP=1 and TP=2 bug Something isn't working
#631 opened Jan 22, 2025 by sichu2023 • Draft
1 of 5 tasks
@sichu2023
5
Add .codecov.yml status checks
#618 opened Jan 17, 2025 by pstjohn Loading…
3
docs: Add myself to docs CODEOWNERS SKIP_CI Completely skips the CI pipeline
#616 opened Jan 16, 2025 by jwilber • Draft
run notebook tests automatically if any notebooks have changed
#615 opened Jan 16, 2025 by pstjohn Loading…
9 tasks
6
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