[pull] develop from openml:develop #38
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Prepare 11.0 release
Release 0.12
Create release 0.12.1
Release 0.12.2
Bumps [actions/checkout](https://github.com/actions/checkout) from 2 to 3. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](actions/checkout@v2...v3) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update docker actions * Fix context * Specify tag for docker container to use strict python version (3.10) * Load OpenML in Docker file * load correct image * load correct image * Remove loading python again
* Drop upper bound on numpy version * Update changelog
* Allow unknown task types on the server * Applied black to openml/tasks/functions.py * Some more fixes
* Add sklearn marker
* Mark tests that use scikit-learn
* Only run scikit-learn tests multiple times
The generic tests that don't use scikit-learn should only be tested once
(per platform).
* Rename for correct variable
* Add sklearn mark for filesystem test
* Remove quotes around sklearn
* Instead include sklearn in the matrix definition
* Update jobnames
* Add explicit false to jobname
* Remove space
* Add function inside of expression?
* Do string testing instead
* Add missing ${{
* Add explicit true to old sklearn tests
* Add instruction to add pytest marker for sklearn tests
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 2 to 4. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v2...v4) --- updated-dependencies: - dependency-name: actions/setup-python dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
It provides a better repr and is less verbose.
…n run.data_content (#1209) * add test and fix for switch of ground truth and predictions * undo import optimization * fix bug with model passing to function * fix order in other tests * update progress.rst * new unit test for run consistency and bug fixed * clarify new assert * minor loop refactor * refactor default to None * directly test prediction data equal * Update tests/test_runs/test_run.py Co-authored-by: Pieter Gijsbers <[email protected]> * Mark sklearn tests (#1202) * Add sklearn marker * Mark tests that use scikit-learn * Only run scikit-learn tests multiple times The generic tests that don't use scikit-learn should only be tested once (per platform). * Rename for correct variable * Add sklearn mark for filesystem test * Remove quotes around sklearn * Instead include sklearn in the matrix definition * Update jobnames * Add explicit false to jobname * Remove space * Add function inside of expression? * Do string testing instead * Add missing ${{ * Add explicit true to old sklearn tests * Add instruction to add pytest marker for sklearn tests * add test and fix for switch of ground truth and predictions * undo import optimization * fix mask error resulting from rebase * make dummy classifier strategy consistent to avoid problems as a result of the random state problems for sklearn < 0.24 --------- Co-authored-by: Pieter Gijsbers <[email protected]>
* Fix documentation building * Fix numpy version * Fix two links
* Try Ubunte 20.04 for Python 3.6 * use old ubuntu for python 3.6
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1 to 2. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@v1...v2) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* Update run.py * Update run.py updated description to not contain duplicate information. * Update run.py
* Refactor if-statements * Add explicit names to conditional expression * Add 'dependencies' to better mimic OpenMLFlow
* Install custom numpy version for specific combination of Python3.8 and numpy * Debug output * Change syntax * move to coverage action v3 * Remove test output
* added additional task agnostic local result to print of run * add PR to progress.rst * fix comment typo * Update openml/runs/run.py Co-authored-by: Matthias Feurer <[email protected]> * add a function to list available estimation procedures * refactor print to only work for supported task types and local measures * add test for pint out and update progress * added additional task agnostic local result to print of run * add PR to progress.rst * fix comment typo * Update openml/runs/run.py Co-authored-by: Matthias Feurer <[email protected]> * add a function to list available estimation procedures * refactor print to only work for supported task types and local measures * add test for pint out and update progress * Fix CI Python 3.6 (#1218) * Try Ubunte 20.04 for Python 3.6 * use old ubuntu for python 3.6 * Bump docker/setup-buildx-action from 1 to 2 (#1221) Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 1 to 2. - [Release notes](https://github.com/docker/setup-buildx-action/releases) - [Commits](docker/setup-buildx-action@v1...v2) --- updated-dependencies: - dependency-name: docker/setup-buildx-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Update run.py (#1194) * Update run.py * Update run.py updated description to not contain duplicate information. * Update run.py * add type hint for new function * update add description * Refactor if-statements (#1219) * Refactor if-statements * Add explicit names to conditional expression * Add 'dependencies' to better mimic OpenMLFlow * Ci python 38 (#1220) * Install custom numpy version for specific combination of Python3.8 and numpy * Debug output * Change syntax * move to coverage action v3 * Remove test output * added additional task agnostic local result to print of run * add PR to progress.rst * fix comment typo * Update openml/runs/run.py Co-authored-by: Matthias Feurer <[email protected]> * add a function to list available estimation procedures * refactor print to only work for supported task types and local measures * add test for pint out and update progress * added additional task agnostic local result to print of run * add PR to progress.rst * add type hint for new function * update add description * fix run doc string --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: Matthias Feurer <[email protected]> Co-authored-by: Matthias Feurer <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: Vishal Parmar <[email protected]> Co-authored-by: Pieter Gijsbers <[email protected]>
* add better error handling for checksum when downloading a file * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * update usage of __is_checksum_equal * Update openml/_api_calls.py Co-authored-by: Pieter Gijsbers <[email protected]> --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Pieter Gijsbers <[email protected]>
* Correctly only clean up tests/files/ * Log to console for pytest invocation
Release 0.13.1
… Homepage; More documentation for `components` (#1243) * fix task ID for Iris task * update comment on homepage * added additional documentation specific to the `components` parameter. * add change to progress.rst * Fix dataframe append being deprecated by replacing it with (backwards-compatible) pd.concat * fix logging example and add new changes to progress.rst * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix comment too long --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/psf/black: 22.6.0 → 23.3.0](psf/black@22.6.0...23.3.0) - [github.com/pre-commit/mirrors-mypy: v0.961 → v1.2.0](pre-commit/mirrors-mypy@v0.961...v1.2.0) - [github.com/pycqa/flake8: 4.0.1 → 6.0.0](PyCQA/flake8@4.0.1...6.0.0) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix mypy errors: made implicit optional typing to be explicit * Drop duplicate flake8 config * Fix a few flake8 issues * Update python version for pre-commit workflow --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Lennart Purucker <[email protected]> Co-authored-by: Matthias Feurer <[email protected]>
updates: - [github.com/pre-commit/mirrors-mypy: v1.2.0 → v1.3.0](pre-commit/mirrors-mypy@v1.2.0...v1.3.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Remove archive after it is extracted to save disk space * Leave a marker after removing archive to avoid redownload * Automatic refresh if expected marker is absent * Be consistent about syntax use for path construction
* Pass kwargs through task to ```get_dataset``` Allows to follow the directions in the warning ```Starting from Version 0.15 `download_data`, `download_qualities`, and `download_features_meta_data` will all be ``False`` instead of ``True`` by default to enable lazy loading.``` * docs: explain that ```task.get_dataset``` passes kwargs * Update openml/tasks/task.py Remove Py3.8+ feature for backwards compatibility --------- Co-authored-by: Pieter Gijsbers <[email protected]>
* Change defaults for `get_task` * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Fix linting errors * Add missing type annotation --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Expand 0.15.0 changelog with other PRs not yet added * Bump version number * Add newer Python versions since we are compatible * Revert "Add newer Python versions since we are compatible" This reverts commit 5088c80. * Add newer compatible versions of Python
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.6.9](astral-sh/ruff-pre-commit@v0.1.14...v0.6.9) - [github.com/pre-commit/mirrors-mypy: v1.8.0 → v1.11.2](pre-commit/mirrors-mypy@v1.8.0...v1.11.2) - [github.com/python-jsonschema/check-jsonschema: 0.27.3 → 0.29.3](python-jsonschema/check-jsonschema@0.27.3...0.29.3) - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.5.0...v5.0.0) * fix(pre-commit): Minor fixes * maint: Update to 3.8 min --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: eddiebergman <[email protected]>
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3 to 4. - [Release notes](https://github.com/codecov/codecov-action/releases) - [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md) - [Commits](codecov/codecov-action@v3...v4) --- updated-dependencies: - dependency-name: codecov/codecov-action dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
…#1356) * fix(datasets): Add code `111` for dataset description not found error * test(dataset): Test the error raised * test: Make error tested for tighter
…1359) * fix(config): Fix XDG_X_HOME env vars, add OPENML_CACHE_DIR env var * fix(config): Check correct backwards compat location * test: Add safe context manager for environ vriable
* fix: make FakeObject be the correct standard and robustify usage * fix: get none valued study object from server * add: test for minio download failures * fix: skip test for WSL as it is not supported * maint: rework if/else case workflow * maint: ruff fix * add/fix: log messages for no premission * fix: make flow name unique and enable testing of avoiding duplicates
* fix/maint: deprecate outdated examples, discounting progress.rst, and minor fixes to the tests. * doc: update wording to reflect new state
Co-authored-by: ArlindKadra <[email protected]>
* fix: minimal invasive change to avoid stripping whitespaces for feature names Co-authored-by: amastruserio <[email protected]> * fix: roll back change to work with older and newer xmltodict versions * add: test for whitespaces in features xml --------- Co-authored-by: amastruserio <[email protected]>
* fix: if docs do not change, do not fail ci * fix: roll back change that is not 3.8 specific * fix: delete non cleaned up test dirs
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.9 → v0.7.2](astral-sh/ruff-pre-commit@v0.6.9...v0.7.2) - [github.com/pre-commit/mirrors-mypy: v1.11.2 → v1.13.0](pre-commit/mirrors-mypy@v1.11.2...v1.13.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* [pre-commit.ci] pre-commit autoupdate updates: - [github.com/astral-sh/ruff-pre-commit: v0.7.2 → v0.7.3](astral-sh/ruff-pre-commit@v0.7.2...v0.7.3) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Update openml/runs/functions.py --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Pieter Gijsbers <[email protected]>
* Allow skipping parquet download through environment variable * Allow skip of parquet file, fix bug if no pq file is returned * Declare the environment file in config.py
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