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zhuchcn committed Apr 8, 2024
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<!DOCTYPE html>
<!--[if IE 8]><html class="no-js lt-ie9" lang="en" > <![endif]-->
<!--[if gt IE 8]><!--> <html class="no-js" lang="en" > <!--<![endif]-->
<head>
<meta charset="utf-8">
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<meta name="viewport" content="width=device-width, initial-scale=1.0">

<meta name="author" content="Chenghao Zhu">

<link rel="shortcut icon" href="/img/favicon.ico">
<title>moPepGen</title>
<link rel="stylesheet" href="https://fonts.googleapis.com/css?family=Lato:400,700|Roboto+Slab:400,700|Inconsolata:400,700" />

<link rel="stylesheet" href="/css/theme.css" />
<link rel="stylesheet" href="/css/theme_extra.css" />
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<script>hljs.initHighlightingOnLoad();</script>
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<body class="wy-body-for-nav" role="document">

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<nav data-toggle="wy-nav-shift" class="wy-nav-side stickynav">
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<div class="wy-side-nav-search">
<a href="/." class="icon icon-home"> moPepGen</a>

</div>

<div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="main navigation">
<ul>
<li class="toctree-l1"><a class="reference internal" href="/.">Home</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/basics/">moPepGen Basics</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/quick-start/">Quick Start</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/vignette/">Vignette</a>
</li>
</ul>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/file-format/">File Format</a>
</li>
</ul>
<p class="caption"><span class="caption-text">Commands</span></p>
<ul>
<li class="toctree-l1"><a class="reference internal" href="/generate-index/">generateIndex</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/update-index/">updateIndex</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-vep/">parseVEP</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-reditools/">parseREDItools</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-star-fusion/">parseSTARFuion</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-fusion-catcher/">parseFusionCatcher</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-arriba/">parseArriba</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-rmats/">parseRMATS</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/parse-circexplorer/">parseCIRCexplorer</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/call-variant/">callVariant</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/call-novel-orf/">callNovelORF</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/call-alt-translation/">callAltTranslation</a>
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<li class="toctree-l1"><a class="reference internal" href="/filter-fasta/">filterFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/split-fasta/">splitFasta</a>
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<li class="toctree-l1"><a class="reference internal" href="/merge-fasta/">mergeFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/encode-fasta/">encodeFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/decoy-fasta/">decoyFasta</a>
</li>
<li class="toctree-l1"><a class="reference internal" href="/summarize-fasta/">summarizeFasta</a>
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28 changes: 28 additions & 0 deletions assets/_mkdocstrings.css
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/* Avoid breaking parameters name, etc. in table cells. */
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/* Improve rendering of parameters, returns and exceptions. */
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border: none !important;
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.doc-contents .field-list {
margin: 0 !important;
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