Data_model_description

Data field	Type	Description
CIL_CCDB.CIL.Data_types.Still_image	boolean	It is set to true if it is a 2D image. Otherwise, it's set to false
CIL_CCDB.CIL.Data_types.Time_series	boolean	It is set to true if it is a 2D image or Z stack image with the time axis. Otherwise, it's set to false
CIL_CCDB.CIL.Data_types.Video	boolean	It is set to true if it is a video or animation dataset. Otherwise, it's set to false
CIL_CCDB.CIL.Data_types.Z_stack	boolean	It is set to true if it is a Z stack image meaning that it contains 2D images along the z axis. Otherwise, it's set to false
CIL_CCDB.CIL.Data_types.Still_image	boolean	It is set to true if it is a 2D image. Otherwise, it's set to false
CIL_CCDB.CIL.Status.Archived_data	long	It is an optional field. It contains the archival timestamp without time zone.
CIL_CCDB.CIL.Status.Deleted	boolean	It is set to true if this dataset is logically deleted
CIL_CCDB.CIL.Status.Is_public	boolean	It is set to true if this dataset is a public dataset
CIL_CCDB.CIL.Status.Last_modified	long	It is an optional field. It contains the most recent modification timestamp without time zone
CIL_CCDB.CIL.Status.Owner	String	It is an optional field. It is used internally for identifying who the data owner is
CIL_CCDB.CIL.Status.Rsync_date	long	It is an optional field. It is used internally for keeping tracking the Rysnc timestamp
CIL_CCDB.CIL.Citation.Title	String	It contains the citation information for the people who want to cite the CIL
CIL_CCDB.CIL.Citation.ARK	String	Archival Resource Key
CIL_CCDB.CIL.Citation.DOI	String	Digital Object Identifier
CIL_CCDB.CIL.Image_files.File_path	String	It contains the CIL conventional file path such as $ID.tif, $ID.jpg, or $ID.zip
CIL_CCDB.CIL.Image_files.File_type	String	It contains the CIL conventional file type such as OME_tif, Jpeg, or Zip
CIL_CCDB.CIL.Image_files.Mime_type	String	It contains the mime type for the file such as image/tif, image/jpeg, and application/zip
CIL_CCDB.CIL.Image_files.Size	long	It contains the data size in number of bytes
CIL_CCDB.CIL.Alternative_image_files.File_path	String	It is an optional field. Alternative_image_files.File_path overwrites Image_files.File_path when the file path does not meet the CIL file convention
CIL_CCDB.CIL.Alternative_image_files.File_type	String	It is an optional field. Alternative_image_files.File_type overwrites Image_files.File_type when the file path does not meet the CIL file convention
CIL_CCDB.CIL.Alternative_image_files.Mime_type	String	It is an optional field. Alternative_image_files.Mime_type overwrites Image_files.Mime_type when the file path does not meet the CIL file convention
CIL_CCDB.CIL.Alternative_image_files.Size	long	It is an optional field. Alternative_image_files.Size overwrites Image_files.Size when the file path does not meet the CIL file convention
CIL_CCDB.CIL.Alternative_image_files.URL_postfix	String	It is an optional field. URL_postfix is used to compose the downloadable with the prefix, https://cildata.crbs.ucsd.edu
CIL_CCDB.CIL.CORE.ATTRIBUTION.Contributors	String	It is an optional field. The author of the dataset
CIL_CCDB.CIL.CORE.ATTRIBUTION.DATE	String	It is an optional field. "MM/YYYY" is the format
CIL_CCDB.CIL.CORE.ATTRIBUTION.OTHER	String	It is an optional field. It contains the additional information about the attribution
CIL_CCDB.CIL.CORE.ATTRIBUTION.PUBLISHED	String	It is an optional field. It contains the publication information.
CIL_CCDB.CIL.CORE.ATTRIBUTION.PUBMED	String	It is an optional field. It contains the PUBMED ID.
CIL_CCDB.CIL.CORE.ATTRIBUTION.URLs	String	It is an optional field. It contains the external hyperlink.
CIL_CCDB.CIL.CORE.BIOLOGICALPROCESS.onto_id	String	It is an optional field. It contains the ontology ID in the biological process domain.
CIL_CCDB.CIL.CORE.BIOLOGICALPROCESS.onto_name	String	It is an optional field. It contains the scientific name in the biological process domain.
CIL_CCDB.CIL.CORE.BIOLOGICALPROCESS.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the biological process in this dataset.
CIL_CCDB.CIL.CORE.CELLLINE.onto_id	String	It is an optional field. It contains the ontology ID in the cell line domain.
CIL_CCDB.CIL.CORE.CELLLINE.onto_name	String	It is an optional field. It contains the scientific name in the cell line domain.
CIL_CCDB.CIL.CORE.CELLLINE.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the cell line in this dataset.
CIL_CCDB.CIL.CORE.CELLTYPE.onto_id	String	It is an optional field. It contains the ontology ID in the cell type domain.
CIL_CCDB.CIL.CORE.CELLTYPE.onto_name	String	It is an optional field. It contains the scientific name in the cell type domain.
CIL_CCDB.CIL.CORE.CELLTYPE.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the cell type in this dataset.
CIL_CCDB.CIL.CORE.CELLULARCOMPONENT.onto_id	String	It is an optional field. It contains the ontology ID in the cell component domain.
CIL_CCDB.CIL.CORE.CELLULARCOMPONENT.onto_name	String	It is an optional field. It contains the scientific name in the cell component domain.
CIL_CCDB.CIL.CORE.CELLULARCOMPONENT.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the cell component in this dataset.
CIL_CCDB.CIL.CORE.CHEMICAL_COMPOUNDS	String	It is an optional field. It contains the information about the chemical compounds.
CIL_CCDB.CIL.CORE.DIMENSION.Space.Image_size	long	It is an optional field. It contains the image size.
CIL_CCDB.CIL.CORE.DIMENSION.Space.Pixel_size.value	long	It is an optional field. It contains the pixel value.
CIL_CCDB.CIL.CORE.DIMENSION.Space.Pixel_size.unit	String	It is an optional field. It contains the pixel unit.
CIL_CCDB.CIL.CORE.DIMENSION.Space.axis	String	It is an optional field. It contains the axis such as X, Y, or Z.
CIL_CCDB.CIL.CORE.DIMENSION.Time.value	long	It is an optional field. It contains the scan duration value.
CIL_CCDB.CIL.CORE.DIMENSION.Time.unit	String	It is an optional field. It contains the scan duration unit.
CIL_CCDB.CIL.CORE.DIMENSION.Time.frame	String	It is an optional field. It contains number of frame in String.
CIL_CCDB.CIL.CORE.DIMENSION.Wavelength.value	long	It is an optional field. It contains the wavelength value.
CIL_CCDB.CIL.CORE.DIMENSION.Wavelength.unit	String	It is an optional field. It contains the wavelength unit.
CIL_CCDB.CIL.CORE.DIMENSION.Wavelength.note	String	It is an optional field. It contains the note about the wavelength.
CIL_CCDB.CIL.CORE.GROUP_ID	String	It is an optional field. The ID is used for grouping a collection of images.
CIL_CCDB.CIL.CORE.HUMAN_DEV_ANATOMY.onto_id	String	It is an optional field. It contains the ontology ID in the human development anatomy domain.
CIL_CCDB.CIL.CORE.HUMAN_DEV_ANATOMY.onto_name	String	It is an optional field. It contains the scientific name in the human development anatomy domain.
CIL_CCDB.CIL.CORE.HUMAN_DEV_ANATOMY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the human development anatomy in this dataset.
CIL_CCDB.CIL.CORE.HUMAN_DISEASE.onto_id	String	It is an optional field. It contains the ontology ID in the human disease domain.
CIL_CCDB.CIL.CORE.HUMAN_DISEASE.onto_name	String	It is an optional field. It contains the scientific name in the human disease domain.
CIL_CCDB.CIL.CORE.HUMAN_DISEASE.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the human disease in this dataset.
CIL_CCDB.CIL.CORE.IMAGEDESCRIPTION	String	It contains the image description about this dataset.
CIL_CCDB.CIL.CORE.IMAGINGMODE.onto_id	String	It is an optional field. It contains the ontology ID in the image mode domain.
CIL_CCDB.CIL.CORE.IMAGINGMODE.onto_name	String	It is an optional field. It contains the scientific name in the image mode domain.
CIL_CCDB.CIL.CORE.IMAGINGMODE.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the image mode in this dataset.
CIL_CCDB.CIL.CORE.ITEMTYPE.onto_id	String	It is an optional field. It contains the ontology ID in the image type domain.
CIL_CCDB.CIL.CORE.ITEMTYPE.onto_name	String	It is an optional field. It contains the scientific name in the image type domain.
CIL_CCDB.CIL.CORE.ITEMTYPE.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the image type in this dataset.
CIL_CCDB.CIL.CORE.MOLECULARFUNCTION.onto_id	String	It is an optional field. It contains the ontology ID in the molecular function domain.
CIL_CCDB.CIL.CORE.MOLECULARFUNCTION.onto_name	String	It is an optional field. It contains the scientific name in the molecular function domain.
CIL_CCDB.CIL.CORE.MOLECULARFUNCTION.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the molecular function in this dataset.
CIL_CCDB.CIL.CORE.MOUSE_GROSS_ANATOMY.onto_id	String	It is an optional field. It contains the ontology ID in the mouse gross anatomy domain.
CIL_CCDB.CIL.CORE.MOUSE_GROSS_ANATOMY.onto_name	String	It is an optional field. It contains the scientific name in the mouse gross anatomy domain.
CIL_CCDB.CIL.CORE.MOUSE_GROSS_ANATOMY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the mouse gross anatomy in this dataset.
CIL_CCDB.CIL.CORE.NCBIORGANISMALCLASSIFICATION.onto_id	String	It is an optional field. It contains the ontology ID in the NCBI organism classification domain.
CIL_CCDB.CIL.CORE.NCBIORGANISMALCLASSIFICATION.onto_name	String	It is an optional field. It contains the scientific name in the NCBI organism classification domain.
CIL_CCDB.CIL.CORE.NCBIORGANISMALCLASSIFICATION.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the NCBI organism classification in this dataset.
CIL_CCDB.CIL.CORE.PARAMETERIMAGED.onto_id	String	It is an optional field. It contains the ontology ID in the image parameter domain.
CIL_CCDB.CIL.CORE.PARAMETERIMAGED.onto_name	String	It is an optional field. It contains the scientific name in the image parameter domain.
CIL_CCDB.CIL.CORE.PARAMETERIMAGED.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the image parameter in this dataset.
CIL_CCDB.CIL.CORE.PATHOLOGICALPROCESS.onto_id	String	It is an optional field. It contains the ontology ID in the pathological process domain.
CIL_CCDB.CIL.CORE.PATHOLOGICALPROCESS.onto_name	String	It is an optional field. It contains the scientific name in the pathological process domain.
CIL_CCDB.CIL.CORE.PATHOLOGICALPROCESS.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the pathological process in this dataset.
CIL_CCDB.CIL.CORE.PLANT_GROWTH.onto_id	String	It is an optional field. It contains the ontology ID in the plant growth domain.
CIL_CCDB.CIL.CORE.PLANT_GROWTH.onto_name	String	It is an optional field. It contains the scientific name in the plant growth domain.
CIL_CCDB.CIL.CORE.PLANT_GROWTH.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the plant growth in this dataset.
CIL_CCDB.CIL.CORE.PREPARATION.onto_id	String	It is an optional field. It contains the ontology ID in the subject preparation domain.
CIL_CCDB.CIL.CORE.PREPARATION.onto_name	String	It is an optional field. It contains the scientific name in the subject preparation domain.
CIL_CCDB.CIL.CORE.PREPARATION.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the subject preparation in this dataset.
CIL_CCDB.CIL.CORE.PROCESSINGHISTORY.onto_id	String	It is an optional field. It contains the ontology ID in the processing history domain.
CIL_CCDB.CIL.CORE.PROCESSINGHISTORY.onto_name	String	It is an optional field. It contains the scientific name in the processing history domain.
CIL_CCDB.CIL.CORE.PROCESSINGHISTORY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the processing history in this dataset.
CIL_CCDB.CIL.CORE.RELATIONTOINTACTCELL.onto_id	String	It is an optional field. It contains the ontology ID in the intact cell relation domain.
CIL_CCDB.CIL.CORE.RELATIONTOINTACTCELL.onto_name	String	It is an optional field. It contains the scientific name in the intact cell relation domain.
CIL_CCDB.CIL.CORE.RELATIONTOINTACTCELL.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the intact cell relation in this dataset.
CIL_CCDB.CIL.CORE.SOURCEOFCONTRAST.onto_id	String	It is an optional field. It contains the ontology ID in the source contrast domain.
CIL_CCDB.CIL.CORE.SOURCEOFCONTRAST.onto_name	String	It is an optional field. It contains the scientific name in the source contrast domain.
CIL_CCDB.CIL.CORE.SOURCEOFCONTRAST.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the source contrast in this dataset.
CIL_CCDB.CIL.CORE.SPECIESTAXASPECIFIC.onto_id	String	It is an optional field. It contains the ontology ID in the species taxonomy domain.
CIL_CCDB.CIL.CORE.SPECIESTAXASPECIFIC.onto_name	String	It is an optional field. It contains the scientific name in the species taxonomy domain.
CIL_CCDB.CIL.CORE.SPECIESTAXASPECIFIC.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the species taxonomy in this dataset.
CIL_CCDB.CIL.CORE.TECHNICALDETAILS.free_text	String	It is an optional field. It contains the technical details about the dataset.
CIL_CCDB.CIL.CORE.TELEOST_ANATOMY.onto_id	String	It is an optional field. It contains the ontology ID in the teleost anatomy domain.
CIL_CCDB.CIL.CORE.TELEOST_ANATOMY.onto_name	String	It is an optional field. It contains the scientific name in the teleost anatomy domain.
CIL_CCDB.CIL.CORE.TELEOST_ANATOMY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the teleost anatomy in this dataset.
CIL_CCDB.CIL.CORE.TERMSANDCONDITIONS.free_text	String	It contains the terms and conditions about this dataset.
CIL_CCDB.CIL.CORE.VISUALIZATIONMETHODS.onto_id	String	It is an optional field. It contains the ontology ID in the visualization method domain.
CIL_CCDB.CIL.CORE.VISUALIZATIONMETHODS.onto_name	String	It is an optional field. It contains the scientific name in the visualization method domain.
CIL_CCDB.CIL.CORE.VISUALIZATIONMETHODS.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the visualization method in this dataset.
CIL_CCDB.CIL.CORE.XENOPUS_ANATOMY.onto_id	String	It is an optional field. It contains the ontology ID in the xenopus anatomy domain.
CIL_CCDB.CIL.CORE.XENOPUS_ANATOMY.onto_name	String	It is an optional field. It contains the scientific name in the xenopus anatomy domain.
CIL_CCDB.CIL.CORE.XENOPUS_ANATOMY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the xenopus anatomy in this dataset.
CIL_CCDB.CIL.CORE.ZEBRAFISH_ANATOMY.onto_id	String	It is an optional field. It contains the ontology ID in the zebrafish anatomy domain.
CIL_CCDB.CIL.CORE.ZEBRAFISH_ANATOMY.onto_name	String	It is an optional field. It contains the scientific name in the zebrafish anatomy domain.
CIL_CCDB.CIL.CORE.ZEBRAFISH_ANATOMY.free_text	String	It is an optional field. If no ontology ID is used, this field provides the free text about the zebrafish anatomy in this dataset.