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update n5 artifact versions #289

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Signed-off-by: Curtis Rueden <[email protected]>
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@bogovicj Thanks. The CI build isn't finished yet, but already multiview-reconstruction and n5-universe failed to build with the updated BOM. Are you comfortable digging into why not, and addressing the issues? Or do you need help?

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Here are the multiview-reconstruction errors:

Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/fiji/spimdata/pointspreadfunctions/PointSpreadFunction.java:[32,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/fiji/plugin/resave/Resave_N5Api.java:[43,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/process/n5api/N5ApiTools.java:[46,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
...
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/fiji/spimdata/interestpoints/InterestPointsN5.java:[39,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/process/export/ExportN5Api.java:[44,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/process/n5api/SpimData2Tools.java:[45,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/process/export/ExportN5Api.java:[111,9] cannot find symbol
  symbol:   class StorageFormat
  location: class net.preibisch.mvrecon.process.export.ExportN5Api
Error:  multiview-reconstruction/src/main/java/net/preibisch/mvrecon/process/n5api/SpimData2Tools.java:[91,31] cannot find symbol
  symbol:   class StorageFormat
  location: class net.preibisch.mvrecon.process.n5api.SpimData2Tools
...
Error:  multiview-reconstruction/src/main/java/util/URITools.java:[51,53] cannot find symbol
  symbol:   class StorageFormat
  location: class org.janelia.saalfeldlab.n5.universe.N5Factory
Error:  multiview-reconstruction/src/main/java/util/URITools.java:[187,59] cannot find symbol
  symbol:   class StorageFormat
  location: class util.URITools
...
[INFO] 19 errors 

and the n5-universe test failure summary:

Error:  Errors: 
Error:  org.janelia.saalfeldlab.n5.universe.ZarrStorageTests$ZarrAmazonS3MockTest.testList
Error:    Run 1: ZarrStorageTests$ZarrAmazonS3MockTest>AbstractN5Test.testList:832 » NullPointer
Error:    Run 2: ZarrStorageTests$ZarrAmazonS3MockTest>AbstractN5Test.testList:832 » NullPointer
[INFO] 
Error:  org.janelia.saalfeldlab.n5.universe.ZarrStorageTests$ZarrGoogleCloudMockTest.testList
Error:    Run 1: ZarrStorageTests$ZarrGoogleCloudMockTest>AbstractN5Test.testList:832 » NullPointer
Error:    Run 2: ZarrStorageTests$ZarrGoogleCloudMockTest>AbstractN5Test.testList:832 » NullPointer
[INFO] 
[INFO] 
Error:  Tests run: 464, Failures: 0, Errors: 2, Skipped: 12

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Thanks - will check it out.

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bogovicj commented Mar 31, 2025

Made a PR to address multiview-reconstruction: PreibischLab/multiview-reconstruction#72

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