Merge pull request #32 from pachterlab/dev

Dev -> main

gget/__init__.py

@@ -19,6 +19,6 @@
 # Mute numexpr threads info
 logging.getLogger("numexpr").setLevel(logging.WARNING)
 
-__version__ = "0.3.7"
+__version__ = "0.3.8"
 __author__ = "Laura Luebbert"
 __email__ = "[email protected]"

gget/gget_alphafold.py

@@ -219,6 +219,11 @@ def alphafold(
     the AlphaFold-Multimer paper (https://www.biorxiv.org/content/10.1101/2021.10.04.463034v1).
     """
 
+    if platform.system() == "Windows":
+        logging.warning(
+            "gget setup alphafold and gget alphafold are not supported on Windows OS."
+        )
+
     ## Check if third-party dependencies are installed
     # Check if openmm is installed
     try:

gget/gget_setup.py

@@ -47,6 +47,11 @@ def setup(module):
         )
 
     if module == "alphafold":
+        if platform.system() == "Windows":
+            logging.warning(
+                "gget setup alphafold and gget alphafold are not supported on Windows OS."
+            )
+
         ## Make sure package paths are appended so openmm can be imported
         site_packages_path = os.__file__.split("os.py")[0] + "site-packages"
         if site_packages_path not in sys.path:
@@ -316,6 +321,7 @@ def setup(module):
                     sys.stderr.write(stderr)
             # Exit system if the subprocess returned with an error
             if process.wait() != 0:
+                logging.error("Model parameter download failed.")
                 return
             else:
                 logging.info("Model parameter download complete.")