Repositories list

• jl-abm

  Public
  ABM examples in Julia

  jupyterjuliajupyter-notebook+ 3julia-languageagent-based-modelingjupyter-book

  MIT License

  •0•3•0•0•Updated Mar 10, 2025Mar 10, 2025

• mmsb-bebi-5009

  Public
  Mathematical Modeling for Systems Biology

  computational-biologyjulialangjupyter-book+ 1julia

  MIT License

  •1•5•0•0•Updated Mar 10, 2025Mar 10, 2025

• camkii-cardiomyocyte-model

  Public
  Neonatal rat cardiomyocyte model and CaMKII dynamics

  Julia

  •

  MIT License

  •0•0•0•0•Updated Mar 10, 2025Mar 10, 2025

• ecme-rirr-dox

  Public
  Cardiomyocyte electrophysiology and bioenergetics model with doxorubicin perturbation

  Julia

  •

  MIT License

  •0•0•0•0•Updated Mar 9, 2025Mar 9, 2025

• ReportTex

  Public template
  A LaTeX template for reports. Supported by Tectonic/Github CI/makefile

  TeX

  •1•0•0•0•Updated Mar 3, 2025Mar 3, 2025

• mitodyn-ode

  Public
  Code for mitochondrial dynamics ODE manuscript.

  juliajulialangode-model+ 2mitochondriajupyter-book

  Julia

  •

  MIT License

  •0•2•0•0•Updated Mar 3, 2025Mar 3, 2025

• mmsb-bebi-5009-python

  Public
  Python notebooks for Mathematical modeling for Systems Biology

  pythoncomputational-biologyjupyter-book

  MIT License

  •0•0•0•0•Updated Mar 3, 2025Mar 3, 2025

• Mitochondrial-Network-Model

  Public
  Mitochondrial Network Agent-based Model by Chu and Tseng

  mitochondriapython

  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Mar 1, 2025Mar 1, 2025

• APHRS2018-WenWei

  Public archive
  Source code for APHRS 2018 Taipei. Presenter: WenWei Tseng

  Julia

  •

  MIT License

  •0•0•0•0•Updated Jul 23, 2024Jul 23, 2024

• mitochondria-retrograde-model

  Public archive
  Mitochondria Retrograde (RTG) Signalling model

  juliaode-modelmitochondria+ 1jupyter-book

  Julia

  •

  MIT License

  •0•2•1•2•Updated Jun 11, 2024Jun 11, 2024

• confocal_mito_analysis

  Public
  Python

  •1•0•0•1•Updated Jun 3, 2024Jun 3, 2024

• mito-network-sharing

  Public
  Sharing of contents on mitochondrial encounter networks

  C

  •1•0•0•0•Updated May 2, 2024May 2, 2024

• DenT_

  Public
  DenT paper revision

  Python

  •0•0•0•0•Updated May 2, 2024May 2, 2024

• Unet_Mito

  Public
  Python

  •1•0•0•0•Updated May 2, 2024May 2, 2024

• ML-RNA-Seq

  Public
  Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 19, 2023Dec 19, 2023

• intro-github-vscode

  Public
  Lab introduction to Git, GitHub, and VS Code

  Creative Commons Zero v1.0 Universal

  •0•0•0•0•Updated Nov 9, 2023Nov 9, 2023

• bulk_rnaseq

  Public
  A pipeline of analyzing bulk RNAseq data

  R

  •0•1•0•1•Updated Oct 2, 2023Oct 2, 2023

• mmsb-metanet

  Public archive
  Metabolic network and flux balance analysis for Mathematical modeling of systems biology

  MIT License

  •0•0•1•0•Updated May 26, 2023May 26, 2023

• rnaseq_rtg_expression

  Public archive
  Visualize retrograde signalling (RTG) protein expressions from RNAseq data

  MIT License

  •0•0•0•3•Updated Jan 23, 2023Jan 23, 2023

• ecme-model-descriptor

  Public archive
  Model descriptors for ECME (Electrophiology-Contraction and Mitochondrial Energetics) model

  TeX

  •0•0•1•2•Updated Jan 17, 2023Jan 17, 2023

• DenT

  Public
  Python

  •0•0•0•0•Updated Sep 23, 2022Sep 23, 2022

• cell-cycle-huang

  Public
  Cell cycle phases classification by Chi-Rong Huang

  Jupyter Notebook

  •0•0•0•0•Updated Sep 20, 2022Sep 20, 2022

• RetroSignalModel.jl

  Public archive
  Original: https://github.com/stevengogogo/RetroSignalModel.jl

  juliamitochondria

  Julia

  •

  MIT License

  •0•0•1•0•Updated May 1, 2022May 1, 2022

• MitoRetroDynamics

  Public archive
  Source code for the article: "Mathematical Model for the Study of Mitochondrial Retrograde Signaling Dynamics"

  Jupyter Notebook

  •1•0•0•0•Updated Mar 21, 2022Mar 21, 2022

• MitosisClassification

  Public
  Final project of Deep Medical Image Analysis

  HTML

  •1•0•0•0•Updated Dec 1, 2021Dec 1, 2021

• tree-of-life

  Public archive
  bioinformaticsphylogenetic-trees

  MIT License

  •0•0•0•0•Updated Sep 8, 2018Sep 8, 2018