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    608 repositories

    • wdl-unit-tests

      Public
      Collection of simple WDL's for use in unit testing of WDL-centric software such as PROOF
      WDL
      •
      MIT License
      •0•0•28•8•Updated Mar 1, 2025Mar 1, 2025

    • nf-kneaddata

      Public
      Nextflow workflow used to run kneaddata
      Nextflow
      •
      MIT License
      •0•0•0•0•Updated Mar 1, 2025Mar 1, 2025

    • workflows-cirro

      Public
      Collection of workflow configurations for execution via Cirro
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • nf-midas

      Public
      Nextflow workflow running MIDAS for metagenomic analysis
      MIT License
      •0•0•0•0•Updated Feb 28, 2025Feb 28, 2025

    • trm-calculator

      Public
      TRM R Shiny app repo
      R
      •
      MIT License
      •0•1•0•0•Updated Feb 28, 2025Feb 28, 2025

    • gig-map

      Public
      Build a map of genes present across a set of microbial genomes
      Python
      •4•14•0•0•Updated Feb 28, 2025Feb 28, 2025

    • gimap

      Public
      Genetic Interaction MAPping for dual target CRISPR screens
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •0•0•6•0•Updated Feb 28, 2025Feb 28, 2025

    • cut-and-run-viewer

      Public
      Visualization of CUT&RUN results
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 27, 2025Feb 27, 2025

    • GDSCNsoilsites

      Public
      Homepage for BioDIGS Project. Learn about the project and download data.
      datametagenomicsstudent-researchbiodigs
      R
      •
      MIT License
      •0•1•11•0•Updated Feb 27, 2025Feb 27, 2025

    • pgmap

      Public
      Python
      •1•0•5•2•Updated Feb 26, 2025Feb 26, 2025

    • ichorCurate

      Public
      Python
      •
      Other
      •1•0•0•0•Updated Feb 26, 2025Feb 26, 2025

    • VISCtemplates

      Public
      Tools for writing reproducible reports at VISC
      visc
      R
      •
      Other
      •2•6•36•5•Updated Feb 26, 2025Feb 26, 2025

    • rnaseq-de-viewer-marimo

      Public
      View for RNAseq-based Differential Expression Analysis Results using Marimo
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 25, 2025Feb 25, 2025

    • pg-guide

      Public
      Python
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • integrationsites

      Public
      The Integration Sites web application is a bioinformatics tool to detect the integration sites of HIV into the human genome
      JavaScript
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • shiny-and-leaflet

      Public
      R
      •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

    • ocdo

      Public
      Home of the OCDO public website
      SCSS
      •0•0•0•2•Updated Feb 24, 2025Feb 24, 2025

    • itn-dashboard

      Public
      ITN Dashboard for data generated from metricminer
      dasl
      R
      •0•0•6•0•Updated Feb 23, 2025Feb 23, 2025

    • mRNA_COVID_Vaccine_waning

      Public
      Database of studies on waning COVID immunity
      TeX
      •0•0•0•0•Updated Feb 22, 2025Feb 22, 2025

    • wiki

      Public
      SciWiki: Collective KnowledgeBase for Scientific Data and Use
      data-sciencebioinformaticswikicomputingsciwikifhdaslcommunitydocumentationopen-science
      Python
      •
      Other
      •45•38•65•2•Updated Feb 21, 2025Feb 21, 2025

    • easybuild-life-sciences

      Public
      Howto and implementation documentation
      easybuildlifesciencescientific-softwareeasyconfig
      C++
      •6•22•6•0•Updated Feb 21, 2025Feb 21, 2025

    • WiPhy_HIV

      Public
      C++
      •
      GNU General Public License v3.0
      •2•1•0•1•Updated Feb 21, 2025Feb 21, 2025

    • differential-expression-viewer

      Public
      Visualization of differential expression results
      Python
      •
      MIT License
      •2•2•0•0•Updated Feb 20, 2025Feb 20, 2025

    • target-data-viz

      Public
      Shiny app for visualizing TARGET pediatric AML data
      HTML
      •2•3•8•0•Updated Feb 13, 2025Feb 13, 2025

    • gig-map-viewer

      Public
      Interactive viewer of pangenome results generated by gig-map
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • marimo-publication

      Public
      Example of publishing serverless interactive visualizations using marimo
      Python
      •
      MIT License
      •1•10•0•0•Updated Feb 12, 2025Feb 12, 2025

    • pca-salvage-therapy-predictimands

      Public
      Code supporting "Predictimands for Salvage Therapy in Biochemically Recurrent Prostate Cancer Using Joint Longitudinal and Failure Time Models"
      R
      •0•0•0•0•Updated Feb 12, 2025Feb 12, 2025

    • quality

      Public
      The program QUALITY is a variant of the Minimum χ2 (MC) method for limiting dilution assays. It modifies the MC method to allow the user to specify the probabilities of the false negative and false positive PCR.
      C++
      •0•0•0•0•Updated Feb 11, 2025Feb 11, 2025

    • marimo-viewer-cirro

      Public template
      Marimo-based visualization of data stored in Cirro
      Python
      •
      MIT License
      •2•0•0•0•Updated Feb 10, 2025Feb 10, 2025

    • prometheus-slurm-exporter

      Public
      Prometheus exporter for performance metrics from Slurm.
      Go
      •
      GNU General Public License v3.0
      •156•0•1•0•Updated Feb 6, 2025Feb 6, 2025