Repositories list

• homebrew-BV-BRC-CLI

  Public
  Formula repo for homebrew tap

  Ruby

  •0•0•0•0•Updated Feb 24, 2025Feb 24, 2025

• BV-BRC-CLI

  Public
  The BV-BRC Command Line Interface

  MIT License

  •2•11•0•0•Updated Feb 24, 2025Feb 24, 2025

• dev_container

  Public
  build and deployment environment

  Makefile

  •

  MIT License

  •3•0•6•0•Updated Feb 24, 2025Feb 24, 2025

• p3_cli

  Public
  PATRIC command line interface scripts

  Perl

  •5•1•0•0•Updated Feb 24, 2025Feb 24, 2025

• BV-BRC-Docs

  Public
  The BV-BRC Documentation

  sphinxrestructuredtextpython+ 2markdowndocumentation

  Python

  •10•4•0•0•Updated Feb 20, 2025Feb 20, 2025

• p3_core

  Public
  Core library modules & scripts for PATRIC API integration

  Perl

  •5•0•0•1•Updated Feb 20, 2025Feb 20, 2025

• bvbrc_metacats

  Public
  Perl

  •7•0•3•0•Updated Feb 13, 2025Feb 13, 2025

• p3_assembly

  Public
  Python

  •

  MIT License

  •4•0•0•0•Updated Feb 12, 2025Feb 12, 2025

• BV-BRC-Web

  Public
  The BV-BRC Web Application

  javascriptbioinformaticsgenomics+ 5viralbacterialdojotoolkitresource-centernodejs

  JavaScript

  •

  MIT License

  •23•7•1•7•Updated Feb 10, 2025Feb 10, 2025

• bvbrc_viral_assembly

  Public
  Python

  •1•0•0•0•Updated Feb 10, 2025Feb 10, 2025

• bvbrc_differential_expression

  Public
  Python

  •

  MIT License

  •7•0•0•0•Updated Feb 6, 2025Feb 6, 2025

• runtime_build

  Public
  Perl

  •

  MIT License

  •1•0•0•0•Updated Feb 3, 2025Feb 3, 2025

• p3_genome_annotation

  Public
  PATRIC genome annotation application code

  Perl

  •3•2•0•1•Updated Feb 3, 2025Feb 3, 2025

• BV-BRC-Solr

  Public
  BV-BRC Solr Cloud schema repo

  Shell

  •5•2•0•0•Updated Dec 18, 2024Dec 18, 2024

• BV-BRC-API

  Public
  This repository contains source code for BV-BRC Data API service

  nodejsapihacktoberfest

  CSS

  •

  MIT License

  •12•5•2•9•Updated Dec 10, 2024Dec 10, 2024

• bvbrc_subspecies_classification

  Public
  Perl

  •3•1•0•0•Updated Dec 9, 2024Dec 9, 2024

• p3_metagenomic_read_mapping

  Public
  PATRIC metagenomic read mapping service

  Perl

  •1•0•0•0•Updated Dec 6, 2024Dec 6, 2024

• solr_tools

  Public
  Some useful Solr management tools

  0•0•0•0•Updated Oct 28, 2024Oct 28, 2024

• bvbrc_ceirr_data_submission

  Public
  Perl

  •1•0•0•0•Updated Oct 15, 2024Oct 15, 2024

• p3_binning

  Public
  PATRIC Metagenome Binning Application

  Perl

  •2•0•0•0•Updated Sep 24, 2024Sep 24, 2024

• genome_report

  Public
  HTML

  •2•0•3•15•Updated Sep 20, 2024Sep 20, 2024

• BV-BRC-HostAnnotation

  Public
  C#

  •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

• bvbrc_ha_subtype_conversion

  Public
  HA Subtype Numbering Conversion to renumber HA sequences according to a cross-subtype numbering scheme proposed by Burke and Smith.

  Python

  •4•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• bvbrc_variation

  Public
  BV-BRC variation computation service

  Perl

  •3•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• p3_mauve

  Public
  JavaScript

  •

  MIT License

  •5•0•0•2•Updated Aug 29, 2024Aug 29, 2024

• bvbrc_SARS2Wastewater

  Public
  Python

  •3•0•0•0•Updated Aug 29, 2024Aug 29, 2024

• bvbrc_rnaseq

  Public
  Python

  •6•0•0•0•Updated Aug 28, 2024Aug 28, 2024

• runtime_build_forked

  Public
  Perl

  •

  MIT License

  •14•0•0•0•Updated Aug 15, 2024Aug 15, 2024

• codon_trees

  Public
  Python

  •

  MIT License

  •3•0•0•0•Updated Aug 14, 2024Aug 14, 2024

• bvbrc_taxonomic_classification_2

  Public
  Taxonomic Classification application

  Python

  •2•1•0•0•Updated Jul 30, 2024Jul 30, 2024