v0.11.0

What's Changed

• New data package version v0.6.0.
• Fix bug where cover instead of leftover space was being used in stand alone site selection by @Rosejoycrocker in #610
• Add a new ten site example domain for testing by @Rosejoycrocker in #628
• Fix mcda method bugs by @Rosejoycrocker in #629
• Fix set_factor_bounds! out of bounds for discrete factors by @Zapiano in #631
• Address MCDA error for single locations by @ConnectedSystems in #640
• Replaces distance sorting with restrictions on the number of selected locations in the same reef by @Rosejoycrocker in #635
• Changes to make ADRIA precompilable under Julia v1.10 by @ConnectedSystems in #646
• Update use of Makie/GeoMakie to address deprecation errors by @ConnectedSystems in #647
• Add connectivity data to result set storage by @Rosejoycrocker in #643
• Fix larval connectivity bug by @ConnectedSystems in #648
• Remove examples dir issue #584 by @DanTanAtAims in #651
• Update tests for new sampling method/factor definitions by @ConnectedSystems in #653
• Update factor type documentation by @ConnectedSystems in #654
• Update factor types and their use by @ConnectedSystems in #636
• Speed up calculation of truncated normal mean and cdf by @DanTanAtAims in #652
• Add a default size for scenario plots by @ConnectedSystems in #657
• CompatHelper: add new compat entry for StatsFuns at version 1, (keep existing compat) by @github-actions in #658
• CompatHelper: add new compat entry for SpecialFunctions at version 2, (keep existing compat) by @github-actions in #659
• Fix bleaching mortality by @ConnectedSystems in #660
• Clean up settler cover function to reduce confusion by @ConnectedSystems in #662
• Only load up relevant RME SSP datasets by @ConnectedSystems in #663
• Reset deployed-coral-risk-tol range by @ConnectedSystems in #664
• Clean up scenario running methods by @ConnectedSystems in #665
• Clean up use of TP matrices to align with conceptualisation of connectivity by @ConnectedSystems in #667
• Support updated domain structure by @ConnectedSystems in #669
• Adjustment to simulated events to address numerical errors by @ConnectedSystems in #668
• Return 0 in cases where lb > ub by @ConnectedSystems in #666
• Fix erroneous handling of location IDs by @ConnectedSystems in #671
• Fix error in domain loading when cluster_id is already in string format by @Rosejoycrocker in #673
• Add test domain for ReefModDomain type by @Rosejoycrocker in #675
• Additional setup instructions for code style and formatting by @ConnectedSystems in #676
• Fix cyclone sorting by @Zapiano in #683
• removed deprecate functions and function calls by @DanTanAtAims in #684
• restructured documentation image directories by @DanTanAtAims in #685
• Fix readjustment of number of slices bug in RSA by @Rosejoycrocker in #679
• Truncated normal changes by @DanTanAtAims in #687
• Allow user to set whatever bounds they wish by @ConnectedSystems in #688
• Switch to YAXArrays when runnin scenarios by @Zapiano in #690
• Remove factors input from rsa() and use scenario dataframe column names instead by @Rosejoycrocker in #696
• updated data loading test for migration to YAXArrays by @DanTanAtAims in #697
• Further updates to scenario runs with MCDA by @ConnectedSystems in #698
• Remove MKL from build process by @ConnectedSystems in #705
• Migrate metrics.jl to YAXArrays by @Zapiano in #709
• Yax cube tests by @DanTanAtAims in #704
• Yax viz by @DanTanAtAims in #703
• Yax test update by @DanTanAtAims in #700
• Remove GC workaround by @ConnectedSystems in #711
• Yax migration miscellaneous by @Zapiano in #715
• Keep metadata in results by @ConnectedSystems in #716
• CompatHelper: bump compat for DimensionalData to 0.26, (keep existing compat) by @github-actions in #714
• Finalize update of standalone MCDA methods by @ConnectedSystems in #717
• Update all tests and remove NamedDims and AxisKeys from ADRIA.jl by @Zapiano in #718
• Validating MCDA methods and initial clean/update of tests by @ConnectedSystems in #719
• Migrate from NamedDimsArrays to YAXArrays by @Zapiano in #695
• Provide a succinct overview of MCDA by @ConnectedSystems in #720
• Add support to cyclone mortality to ReefModDomain by @Zapiano in #722
• Save right intervention label at ResultSet ranks YAXArray by @Zapiano in #724
• Hacky support for later RME reef id list by @ConnectedSystems in #731
• Add support for specifying locations by @ConnectedSystems in #732
• Support more vector types for maps by @ConnectedSystems in #736
• Clean up connectivity and centrality methods by @ConnectedSystems in #737
• Additional rank methods to determine number of locations intervened on per timestep by @ConnectedSystems in #738
• Collection of miscellaneous changes by @ConnectedSystems in #740
• Fix bug, min. locations to select > available locations by @ConnectedSystems in #741
• CompatHelper: bump compat for DimensionalData to 0.27, (keep existing compat) by @github-actions in #744
• Connectivity viz by @DanTanAtAims in #742
• Fix locations selection in ReefMod datapackage cyclone mortality loading by @Zapiano in #723
• Only rank locations with available area > 0 by @ConnectedSystems in #734
• use provided centrality measures instead of defaults by @DanTanAtAims in #751
• Improved support for spatial maps by @ConnectedSystems in #750
• Repeat mention that the VS Code extension is being setup by @ConnectedSystems in #748
• Convenience plotting method for connectivity/centralities by @ConnectedSystems in #752
• Support plotting DHW and cyclone (mortality) scenarios by @ConnectedSystems in #758
• Support deactivating environmental disturbances by @ConnectedSystems in #759
• RME Result Interface by @DanTanAtAims in #745
• add range to for loop by @DanTanAtAims in #762
• Visualization for taxonomy cover. by @DanTanAtAims in #763
• Fix erroneous function call in docstrings by @ConnectedSystems in #773
• CompatHelper: bump compat for NetCDF to 0.12, (keep existing compat) by @github-actions in #765
• CompatHelper: add new compat entry for GraphMakie in [weakdeps] at version 0.5, (keep existing compat) by @github-actions in #766
• CompatHelper: add new compat entry for GeoMakie in [weakdeps] at version 0.6, (keep existing compat) by @github-actions in #767
• CompatHelper: add new compat entry for Makie in [weakdeps] at version 0.21, (keep existing compat) by @github-actions in #764
• improve load_domain docs by @arlowhite in #733
• Change assisted adaptation to a Discrete Uniform value by @ConnectedSystems in #770
• Use underlying data instead of YAXArray type by @ConnectedSystems in #771
• Fix mismatched function name in docstring by @ConnectedSystems in #778
• Fix site_level dosctring by @Zapiano in #782
• Fix visualization type error by @DanTanAtAims in #777
• Add methods to extract deployment location info by @ConnectedSystems in #774
• Increase compression level for ResultSet by @ConnectedSystems in #772
• remove breakpoint in code by @DanTanAtAims in #784
• Clean up defunct dependencies by @ConnectedSystems in #776
• Add default option to _sort_keys by @Zapiano in #787
• Assortment of improvements to SIRUS and Time Series Clustering by @Zapiano in #786
• Coerce to MultiPolygon instead of Polygon by @ConnectedSystems in #793
• julia-actions recommended dependabot.yml by @arlowhite in #791
• Bump julia-actions/cache from 1 to 2 by @dependabot in #795
• Bump julia-actions/setup-julia from 1 to 2 by @dependabot in #796
• Bump actions/checkout from 2 to 4 by @dependabot in #797
• Minor updates to geospatial functions/handling by @ConnectedSystems in #798
• Address tests failing due to type mismatch (scenario confint) by @ConnectedSystems in #801
• Fix depth min/offset being sampled for counterfactual scenarios by @ConnectedSystems in #802
• build: prototype CD integration with Provena to update model by @PeterBaker0 in #808
• Fix broken tests by @Zapiano in #809
• Fix sampling test by @Zapiano in #814
• Increase release version by @DanTanAtAims in #815

New Contributors

• @arlowhite made their first contribution in #733
• @dependabot made their first contribution in #795
• @PeterBaker0 made their first contribution in #808

Full Changelog: v0.10.0...v0.11.0