Releases · nextflow-io/nextflow

19 Mar 20:26

pditommaso

v25.02.1-edge

39f3c05

Version 25.02.1-edge Pre-release

Pre-release

Fix handling of exit status with Azure Batch and Fusion Fusion (#5806) [7085862]
Fix false positive Process already defined error (#5894) [4bd0b61]
Fix Specify container platform when creating test deployment [d27df80]
Removing Azure vmList from log [67ffc8a]
Bump [email protected] [87ef472]

Assets 4

18 Mar 07:38

pditommaso

v25.02.0-edge

dcc386e

Version 25.02.0-edge Pre-release

Pre-release

Add cpu-shares and memory limits to Azure Batch tasks (#5799) [f9c0cbf]
Add Config parser v2 (and loader) (#4744) [b019b0b]
Add Wave container metadata to Platform traces (#5724) [b81178c]
Add disk directive support in Azure Batch (#5784) [113d725]
Add example of dynamic directive with input file (#4545) [2ebeb34]
Add static config schema checking (#5816) [2430ea6]
Add update guide for spot retry strategy (#5872) [f053b81]
Add Script parser v2 (#4613) [7e3868d]
Fix Align container platform with arch directive when using Wave (#5847) [b9d23e2]
Fix Fail if glob does not exist with checkIfExists: true (#4224) [ab358dc]
Fix Consider AWS China as custom endpoint (#5840) [232ce9d]
Fix Flaky tests using random server port [e25d309]
Fix Google Batch autoRetryExitCodes bug (#5828) [cfeedd6]
Fix Ignore Azure pool already exists error (#5721) [e267961]
Fix Prevent S3 global option when using custom endpoints (#5779) [ed9da46]
Fix bugs with strict config parser (#5854) [8f9fe0a]
Fix dynamic publish path (#5809) [6a81c01]
Fix false error in variable visitor (#5765) [c3f67db]
Fix race conditions in e2e tests (#5859) [5081274]
Fix subgraph name collisions in Mermaid DAG (#5843) (#5860) [1d2e7bf]
Improve GH warning reporting [5ead5ba]
Improve Google Batch support for GPUs (#5406) [420fb17]
Improve docs for process path input/output arity (#5842) [15c6f3c]
Improve fusion-symlink.nf test (#5819) [138a1ff]
Improve operator summary (#5880) [a5f1379]
Improve params documentation (#5800) [976e002]
Improve storeDir error message (#5791) [da5f759]
Remove Spack from Wave (2nd) [076c823]
Remove Spack from Wave assets [9c554de]
Remove changed-files GH action due to sec vulnerability [00a53b9]
Remove invalid config option azure.managedIdentity.tenantId (#5846) [6ce8d64]
Remove stack trace from fusion license warn [3e7670f]
Remove unused DSL1 warning (#3671) [bf18ee8]
Skip wave tests when tower access token is not available [6d2dafc]
Update Platform token error message [18b6934]
Update config-to-groovy visitor (#5867) [a23f684]
Update issue and PR templates (#5805) [d8c8151]
Update metrics tutorial (#5853) [130a9c8]
Use parallelization in Gradle build (#5830) [c02fe91]
Use semver to pin only major/minor plugin versions (#5435) [80dec14]
Validates Azure region before checking available VMs (#5108) [080893a]
Bump Ubuntu 22.04 as default SKU for Azure Batch (#5804) [e0ba536]
Bump groovy 4.0.26 [f740bc5]
Bump [email protected] [cca9725]
Bump [email protected] [38e0435]
Bump [email protected] [98da841]
Bump [email protected] [b0fc9de]
Bump [email protected] [d003e2f]
Bump [email protected] [b1df834]

Assets 4

04 Mar 19:39

pditommaso

v24.10.5

b271f85

Version 24.10.5 Latest

Latest

Improve Google Batch executor stability and error handling (#5690) [1a9e8bf]
Fix Mount input file buckets in task arrays for Google Batch (#5739) [0d98442]
Fix Google Batch task array causes process to fail (#5780) [d4c1ba1]
Fixing bug when execution with stub and no stub defined (#5473) [ba5ab06]
Fix Conda directive is not honoured by task array (#5704) [63124eb]
Fix Use unbound queue for transfer thread pool (#5700) [d57a85d]
Bump [email protected] [ee9c1fd]

Assets 4

12 Feb 14:10

pditommaso

v25.01.0-edge

e2ae8a9

Version 25.01.0-edge Pre-release

Pre-release

Add DeadlineExceededException to Google Batch retryable exceptions [944f48f]
Add Fusion token validation (#5614) [1dcb18d]
Add stub flag to task hash only if task has a stub (#5750) [deec443]
Add traceparent header to wave & tower clients (#5725) [7eea9f2]
Allow Azure Batch tasks to be submitted to different pools (#5766) [76790d2]
Configure target java version alongside gradle toolchain (#5676) [2153abb]
Disable cleanup on remote work dir (#5742) [ef67b81]
Do not skip integration tests on PRs [4caf6ef]
Fail the run if publish thread pool times out (#5578) [5325e5a]
Fix Check for number of low priority nodes in Azure Batch before raising a pool resize error (#5576) [9b528c1]
Fix Conda directive is not honoured by task array (#5704) [f8c3b63]
Fix Create parent directory for DAG report (#5752) [62263a3]
Fix Google Batch task array causes process to fail (#5780) [7ad7a23]
Fix Mount input file buckets in task arrays for Google Batch (#5739) [ba171fd]
Fix bugs with workflow outputs (#5502) [ab59d30]
Fix first collection method [a0ca6e4]
Fix stub templates (#5751) [13072d6]
Ignore tests when smoke mode is enabled [3eb6efa]
Improve Google Batch executor stability and error handling (#5690) [b64087f]
Preserve attributes of published files (take 2) (#5660) [422f289]
Remove compileJava options [28e03a2]
Remove redundant exception handling [00376aa]
Revert "Fix the cleanup of local secret file" (#5697) [55f25b3]
Strengthen shell directive validation (#5689) [039c8f3]
Update HyperQueue CLI option (#5730) [BREAKING] [b582cb5]
Update azure deps [b163da9]
Use unbound queue for transfer thread pool (#5700) [9031968]
Bump Fusion to version 2.5 (2nd attempt) [a7f09ae]
Bump gradle 8.12.1 [1fffb85]
Bump groovy 4.0.25 [19c40a4]
Bump io.netty:netty-handler:4.1.118.Final [db4a903]
Bump net.minidev:json-smart:2.5.2 [b5c4faf]
Bump netty-common:4.1.118.Final [8574e24]

Assets 4

20 Jan 16:22

pditommaso

v24.12.0-edge

24faeee

Version 24.12.0-edge Pre-release

Pre-release

Add Warning when Cloudinfo fails in Google Batch machine type selection (#5649) [5aef532]
Add rate limiter to wave requests (#5608) [ecf6829]
Allow named parameters with plugin subcommand (#5643) [f81da8c]
Customise mermaid diagram theme in DAG template (#5553) [54713a1]
Deprecate -with-weblog CLI opt [aa258b4]
Disable AWS SDK v1 warning [cd00a26]
Dump threads only with trace log level [87df7cd]
Ensure job is killed when exception in task status check (#5561) [9eefd20]
Fix CLI params normalization (#5661) [e2e prod] [b5d43ad]
Fix Execution may hang reading trace file (#5683) [17d7a08]
Fix Google Batch hang when internal error during scheduling (#5567) [18f7de1]
Fix GroovyCompiler source and target compability [6dd92e3]
Fix Only close the cache db if it is not null (#5631) [9386082]
Fix Azure repos when clone URL is used (#5667) [dc6cc41]
Fix shell directive with trace command in wrapper script (#4292) [8342889]
Fixing getRepositoryUrl when project name is not provided (#5560) [335701e]
Handle attribute caching with Lustre filesystem (#5650) [61674d2]
Improve Fargate + Wave docs (#5562) [12be47e]
Improve inspect mode (#5605) [8e2056e]
Include all processes in inspect command (#5580) [0aa76af]
Prevent the use existing work dir (#5682) [e14fc99]
Remove 'defaults' conda channel from docs (#5607) [8b54181]
Update Google Batch docs to clarify spot retry behaviour (#5644) [1878836]
Update flux job id regular expression (#5662) [58a0b34]
Use printf instead of echo to write trace file (#5397) [c6434d4]
Bump groovy 4.0.24 missing deps [40670f7]
Bump jgit to version 7.1.0 (#5587) [3d71468]
Bump logback 1.5.13 + slf4j 2.0.16 [cc0163a]
Bump logback 1.5.16 [5ac91f0]
Bump [email protected] [182ddd4]
Bump [email protected] [4d949d1]
Bump [email protected] [741d0f3]
Bump [email protected] [958820f]
Bump [email protected] [fdc32c7]
Bump [email protected] [c173c53]
Bump [email protected] [b747dcf]
Bump [email protected] [2650f07]