Merge Anomaly Detector code into main (#43)

* update python version & add tests for different python versions

* update python version & add tests for different python versions (#14)

* update setup.py (#13)

* add uvad and test

* step1

* setp2

* update Readme.md

* add dockerfile ,move get_margins

* fix predict

* delete pyd

* build success

* add build.py but no .pyd file generated

* update setup.py

* fix some error

* add model folder

---------

Co-authored-by: Duan Juanyong <[email protected]>

* update gitignore

* remove r dependency (#16)

* remove r dependency

* replace rpy2 with rstl

* update

* add build and release workflow (#12)

* Bump gitpython from 3.1.40 to 3.1.41 in /anomaly-detector (#4)

Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.40 to 3.1.41.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.40...3.1.41)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump jinja2 from 3.1.2 to 3.1.3 in /anomaly-detector (#6)

Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.2...3.1.3)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add build workflow

* add build workflow

* add build workflow

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* merge

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* test on different python version (#17)

* Bump gitpython from 3.1.40 to 3.1.41 in /anomaly-detector (#4)

Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.40 to 3.1.41.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.40...3.1.41)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump jinja2 from 3.1.2 to 3.1.3 in /anomaly-detector (#6)

Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.2...3.1.3)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add build workflow

* add build workflow

* add build workflow

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* merge

* add more test cases

* delete some uvad test cases

* delete some uvad test cases

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add caching packages dependencies

* add cache dependencies to boost test

* add cache dependencies to boost test

* Update ci.yml

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* update param check

* test mlflow on UnivariateAnomalyDetector, add new class (#18)

* add e2e_test for UnivariateAnomalyDetector

* add EntireAnomalyDetector, LatestAnomalyDetector

* rename

* update model output & usage

* update test, remove saving results

* update model output to avoid duplicated keys

* check insufficient predict data

* test output (#20)

* Bump gitpython from 3.1.40 to 3.1.41 in /anomaly-detector (#4)

Bumps [gitpython](https://github.com/gitpython-developers/GitPython) from 3.1.40 to 3.1.41.
- [Release notes](https://github.com/gitpython-developers/GitPython/releases)
- [Changelog](https://github.com/gitpython-developers/GitPython/blob/main/CHANGES)
- [Commits](gitpython-developers/GitPython@3.1.40...3.1.41)

---
updated-dependencies:
- dependency-name: gitpython
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* Bump jinja2 from 3.1.2 to 3.1.3 in /anomaly-detector (#6)

Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.2 to 3.1.3.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](pallets/jinja@3.1.2...3.1.3)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: indirect
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* add build workflow

* add build workflow

* add build workflow

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* test poetry install

* merge

* add more test cases

* delete some uvad test cases

* delete some uvad test cases

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add different python version

* add caching packages dependencies

* add cache dependencies to boost test

* add cache dependencies to boost test

* Update ci.yml

* test output

* test output

* test output

* add license to all .py file

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>

* update numpy version to 1.26.x (#21)

* add e2e_test for UnivariateAnomalyDetector

* add EntireAnomalyDetector, LatestAnomalyDetector

* rename

* update numpy version to 1.26.x

* update Dockerfile & pandas version

* Update pyproject.toml

numpy>=1.23.5

* update ci.yml

* fix expectedValue error

* Update pipeline for pypi publish (#22)

* update gitignore

* update build pipeline to push to pypi

* Merge (#23)

* update gitignore

* update build pipeline to push to pypi

* install deps

* update pipeline (#24)

* update pipeline (#25)

* update pipeline (#26)

* update build option

* add wheel

* update pipeline

* add long description

* add long text description type

* change package name

* uploade src only

* update maintainer

* update build

* Bump mlflow from 2.9.2 to 2.10.0 in /anomaly-detector

Bumps [mlflow](https://github.com/mlflow/mlflow) from 2.9.2 to 2.10.0.
- [Release notes](https://github.com/mlflow/mlflow/releases)
- [Changelog](https://github.com/mlflow/mlflow/blob/master/CHANGELOG.md)
- [Commits](mlflow/mlflow@v2.9.2...v2.10.0)

---
updated-dependencies:
- dependency-name: mlflow
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>

* change package name

* update version

* Update README.md

* update pipeline

* update workflow file

* add sample notebook

* update workflow and ignore file

* add numpy for build

* change trigger condition

* release version v0.2.2 (#41)

* fix error in publish pipeline

---------

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: shuawei <[email protected]>
Co-authored-by: luxiong-ms1 <[email protected]>
Co-authored-by: Zeke Xia <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: jr-MS <[email protected]>
Co-authored-by: Zeke Xia <[email protected]>

src/build.py

@@ -0,0 +1,63 @@
+# ---------------------------------------------------------
+# Copyright (c) Microsoft Corporation. All rights reserved.
+# ---------------------------------------------------------
+
+import os
+import os
+import numpy as np
+from distutils.errors import CCompilerError, DistutilsExecError, DistutilsPlatformError
+
+# See if Cython is installed
+try:
+    from Cython.Build import cythonize
+# Do nothing if Cython is not available
+except ImportError:
+    # Got to provide this function. Otherwise, poetry will fail
+    def build(setup_kwargs):
+        pass
+# Cython is installed. Compile
+else:
+    from setuptools import Extension
+    from setuptools.dist import Distribution
+    from setuptools.command.build_ext import build_ext
+# use cythonize to build the extensions
+modules = ["./anomaly_detector/univariate/*.pyx"]
+extensions = cythonize(modules,
+                       language_level=3,
+                       compiler_directives={'linetrace': True},
+                       )
+
+
+# cmdclass = {'build_ext': build_ext}
+class BuildFailed(Exception):
+    pass
+
+
+class ExtBuilder(build_ext):
+
+    def run(self):
+        try:
+            build_ext.run(self)
+        except (DistutilsPlatformError, FileNotFoundError):
+            raise BuildFailed('File not found. Could not compile C extension.')
+
+    def build_extension(self, ext):
+        try:
+            build_ext.build_extension(self, ext)
+        except (CCompilerError, DistutilsExecError, DistutilsPlatformError, ValueError):
+            raise BuildFailed('Could not compile C extension.')
+
+
+cmdclass = {"build_ext": ExtBuilder}
+
+
+def build(setup_kwargs):
+    """Needed for the poetry building interface."""
+
+    os.environ['CFLAGS'] = '-O3'
+
+    setup_kwargs.update({
+        'ext_modules': extensions,
+        'include_dirs': [np.get_include()],
+        'cmdclass': cmdclass
+    })