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1. mims-harvard/TDC mims-harvard/TDC Public

   Therapeutics Commons (TDC): Multimodal Foundation for Therapeutic Science

   Jupyter Notebook 1.1k 190

2. DeepPurpose DeepPurpose Public

   A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)

   Jupyter Notebook 1k 281

3. clinicalBERT clinicalBERT Public

   ClinicalBERT: Modeling Clinical Notes and Predicting Hospital Readmission (CHIL 2020 Workshop)

   Jupyter Notebook 412 107

4. mims-harvard/TxGNN mims-harvard/TxGNN Public

   TxGNN: Zero-shot prediction of therapeutic use with geometric deep learning and clinician centered design

   Jupyter Notebook 189 39

5. snap-stanford/GEARS snap-stanford/GEARS Public

   GEARS is a geometric deep learning model that predicts outcomes of novel multi-gene perturbations

   Python 246 48

6. snap-stanford/POPPER snap-stanford/POPPER Public

   Automated Hypothesis Testing with Agentic Sequential Falsifications

   Python 160 14