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fastq2bcl convert fastq files in a bcl2fastq-able run directory.

Python 10 2 Updated Oct 30, 2023

API libraries, application examples, and custom tools for BaseSpace Clarity LIMS

Python 18 8 Updated Jul 3, 2020

Demultiplexing pipeline for sequencing data

Nextflow 45 43 Updated Mar 26, 2025

Test data to be used for automated testing with the nf-core pipelines

119 387 Updated Mar 27, 2025

Oxford Nanopore's Basecaller

C++ 616 75 Updated Jan 21, 2025

Python package with helper tools for the nf-core community.

Python 252 201 Updated Mar 27, 2025

Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads

Nextflow 21 15 Updated Mar 25, 2025

Static call graph generator. The official Python 3 version. Development repo.

Python 7 1 Updated May 25, 2022
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