Scripts to enable vertex-wise (CIFTI) analysis of ABCD with FSL/PALM and HCP Workbench

CUDA Diffusion Modelling Toolbox

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and appar…

Processing pipelines for the HCP

Nilearn tutorials for OHBM 2016 educational course

FreeSurfer reliabilty and power analysis

BIDS App wrapper for Pydeface

CONN toolbox, development version (conn-toolbox.org)

Dynamic Causal Modeling with Python

SPM (Statistical Parametric Mapping) - Development Version

TAPAS - Translational Algorithms for Psychiatry-Advancing Science

Parse Siemens PMU files

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

Subtype and Stage Inference (SuStaIn) algorithm with an example using simulated data.

Gradient Unwarping in Python

❗ This is a read-only mirror of the CRAN R package repository. rmcorr — Repeated Measures Correlation. Homepage: https://github.com/lmarusich/rmcorr Report bugs for this package: https://github.com…

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

Script to generate correlation matrices from BOLD dense or parcellated time series data.

MATLAB code for reading and writing CIFTI connectivity files

Accelerated Microstructure Imaging via Convex Optimization (AMICO) from diffusion MRI data

micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below

MRtrix scripts to generate dense weighted structural connectomes from the Human Connectome Project "minimally pre-processed" diffusion MRI data

python wrap of fslnets