Visit and demo/use here: SimPheny.iobio
SimPheny.iobio is a real time web application for exploring phenotypic similarity between individuals from multiple populations The application uses a combination of phenotype matching algorithms and visualization techniques to help users identify individuals with similar phenotypes. The application is designed to be used by clinicians & researchers to explore phenotypic similarity between individuals and to help interrogate undiagnosed cases of suspected genetic origin.
![Screenshot 2024-05-03 at 11 35 31 AM](https://private-user-images.githubusercontent.com/45885321/327837006-72e8c7f9-9d3f-4f83-9829-0b7dbe7d9a70.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.XFIYKnfK7eh8_a4xODZDp7DWIEhjF_ATrOykmD1HIec)
Users can input a list of phenotypes for an individual and the application will return a list of individuals with similar phenotypes in a visual representation.
![Screenshot 2024-05-03 at 11 39 25 AM](https://private-user-images.githubusercontent.com/45885321/327840505-d03ff105-d1c9-4acf-b7f1-7768dccc7741.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.obm801KOVy1U-iv_9Fg9dawGCY-waiwenS7s2UbxzQA)
ADD/SELECT PATIENT & EDIT PATIENT Will open a patient chooser/input dialog.
![Screenshot 2024-05-03 at 11 38 44 AM](https://private-user-images.githubusercontent.com/45885321/327840603-1715d20a-647f-4dc0-9e74-6c36cf5e9c54.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MzkzNjkwODUsIm5iZiI6MTczOTM2ODc4NSwicGF0aCI6Ii80NTg4NTMyMS8zMjc4NDA2MDMtMTcxNWQyMGEtNjQ3Zi00ZGMwLTllNzQtNmMzNmNmNWU5YzU0LnBuZz9YLUFtei1BbGdvcml0aG09QVdTNC1ITUFDLVNIQTI1NiZYLUFtei1DcmVkZW50aWFsPUFLSUFWQ09EWUxTQTUzUFFLNFpBJTJGMjAyNTAyMTIlMkZ1cy1lYXN0LTElMkZzMyUyRmF3czRfcmVxdWVzdCZYLUFtei1EYXRlPTIwMjUwMjEyVDEzNTk0NVomWC1BbXotRXhwaXJlcz0zMDAmWC1BbXotU2lnbmF0dXJlPWM5MTAzNmIzMTBjYWNlMDg3YWI1N2M4MTcyMDllNTcyNjI4M2NiM2QwMDE4NTA0NmFhNjI5MmFhMDQ5MDA1MDImWC1BbXotU2lnbmVkSGVhZGVycz1ob3N0In0.vJSF1Yymal730dYQepFqzUXvCJxkOPJpjovN_GXK0I4)
Additionally, users can explore cases from the available populations by selecting a case from the list of available cases within the patient chooser/input dialog.
![Screenshot 2024-05-03 at 11 52 19 AM](https://private-user-images.githubusercontent.com/45885321/327840925-64704eb9-0791-49e4-ae8b-fb61325a2526.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.hCXKw15aUGXq2t8LJA2agDN0zAEoN5W7EHta3nrUjeI)
Currently the application uses publically avaible information and supports comparison of phenotypes between individuals from the following populations:
- UDN: diagnosed cases such as those available through other sources see clinvar's submitted cases for more details
- Orphanet Disease Listings
Comparrison populations can be chosen from the radio selections on the upper bar.
![Screenshot 2024-05-03 at 11 44 34 AM](https://private-user-images.githubusercontent.com/45885321/327841154-dc90e930-4361-4d42-b64b-54b4058a6211.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MzkzNjkwODUsIm5iZiI6MTczOTM2ODc4NSwicGF0aCI6Ii80NTg4NTMyMS8zMjc4NDExNTQtZGM5MGU5MzAtNDM2MS00ZDQyLWI2NGItNTRiNDA1OGE2MjExLnBuZz9YLUFtei1BbGdvcml0aG09QVdTNC1ITUFDLVNIQTI1NiZYLUFtei1DcmVkZW50aWFsPUFLSUFWQ09EWUxTQTUzUFFLNFpBJTJGMjAyNTAyMTIlMkZ1cy1lYXN0LTElMkZzMyUyRmF3czRfcmVxdWVzdCZYLUFtei1EYXRlPTIwMjUwMjEyVDEzNTk0NVomWC1BbXotRXhwaXJlcz0zMDAmWC1BbXotU2lnbmF0dXJlPTAwMWU1NjdjYTM2NTRkZDU1NzUzN2RlMWJlODhjMWRjMGRkY2M3MWExZGQxMDNmMzc4NDI5NDhhMTFmODFlODAmWC1BbXotU2lnbmVkSGVhZGVycz1ob3N0In0.V_AK7eFNFCPBV-3Tlg_EaZ17xaWm57JpX8BDiaTglPU)
After comparrison populations can be filtered on or off of the chart via the chart filter options.
![Screenshot 2024-05-03 at 11 45 19 AM](https://private-user-images.githubusercontent.com/45885321/327841190-a94f0356-170c-4e1c-ba08-070ad4b862c2.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.8IHAex4ENYR634BN5Zo3athrlObEgiMfqf1_sm9shww)