Skip to content

Commit

Permalink
Automated report
Browse files Browse the repository at this point in the history
  • Loading branch information
anitacaron committed Jul 24, 2024
1 parent 49ad2cb commit 94bfa98
Show file tree
Hide file tree
Showing 220 changed files with 39,878 additions and 34,556 deletions.
2 changes: 1 addition & 1 deletion NOTES.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,8 @@ Release Notes

|Ontology|Version|
| :---: | :---: |
|UBERON|2024-05-13|
|CL|2024-05-15|
|UBERON|2024-07-02|
|PCL|2024-01-04|

### ASCT+b Tables
Expand Down
2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/README.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

ASCT+B Validation Reports for Anatomical_Systems (2024-07-17)
ASCT+B Validation Reports for Anatomical_Systems (2024-07-24)
=============================================================

Table of contents
Expand Down
Binary file modified docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf
Binary file not shown.
2 changes: 1 addition & 1 deletion docs/Anatomical_Systems/graph.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

ASCT+B Validation Reports for Anatomical_Systems (2024-07-17)
ASCT+B Validation Reports for Anatomical_Systems (2024-07-24)
=============================================================

# ASCT+B as Graph
Expand Down
4 changes: 2 additions & 2 deletions docs/Blood/README.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

ASCT+B Validation Reports for Blood (2024-07-17)
ASCT+B Validation Reports for Blood (2024-07-24)
================================================

Table of contents
Expand Down Expand Up @@ -140,7 +140,7 @@ In the case of the CT-CT relationship, for each couple of terms, we verify for _

| | row_number | s | slabel | user_slabel | o | olabel | user_olabel | deltaIC |
|----|--------------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------|-------------------------------------------------------|-----------------------------------|---------------------------------------------------------|-----------------------|--------------------------|-----------|
| 0 | [20](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.2418 |
| 0 | [20](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=20:20) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.2415 |
| 5 | [16](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=16:16) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell | dendritic cell type 1 (DC1) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 7 | [17](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 2 (DC2) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
| 9 | [18](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=939446662&range=18:18) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 3 (DC3) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
Expand Down
Binary file modified docs/Blood/assets/ccf_Blood_graph.pdf
Binary file not shown.
2 changes: 1 addition & 1 deletion docs/Blood/class_Blood_log.tsv
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
row_number s slabel user_slabel o olabel user_olabel deltaIC
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.241763166852195
20 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.24150656734389
12 CL:0000816 immature B cell immature B cell UBERON:0000178 Blood Blood
13 CL:0000787 memory B cell memory B cell UBERON:0000178 Blood Blood
14 CL:0000788 naive B cell naive B cell UBERON:0000178 Blood Blood
Expand Down
2 changes: 1 addition & 1 deletion docs/Blood/graph.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@

ASCT+B Validation Reports for Blood (2024-07-17)
ASCT+B Validation Reports for Blood (2024-07-24)
================================================

# ASCT+B as Graph
Expand Down
24 changes: 12 additions & 12 deletions docs/Blood_vasculature/Blood_vasculature_AS_CT_strict_log.tsv
Original file line number Diff line number Diff line change
Expand Up @@ -894,7 +894,7 @@ CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:00
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0018252 internal pudendal vein internal pudendal vein 2697
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0015481 left hepatic artery left hepatic artery 668
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001362 perineal vein perineal vein 2709
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2725
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2725
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001594 azygos vein azygos vein 3025
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0011955 left hepatic vein left hepatic vein 2727
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0014691 right gastric vein right gastric vein 2772
Expand Down Expand Up @@ -994,7 +994,7 @@ CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:00
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001627 middle cerebral artery middle cerebral artery 506
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0011956 right hepatic vein right hepatic vein 2949
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0006663 hemiazygos vein hemiazygos vein 2995
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2947
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2947
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001627 middle cerebral artery middle cerebral artery 510
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0009091 vasa recta ascending limb ascending vasa recta of kidney 2945
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0007693 caroticotympanic artery caroticotympanic artery 444
Expand Down Expand Up @@ -1044,13 +1044,13 @@ CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:00
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001627 middle cerebral artery middle cerebral artery 494
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001141 right renal vein right renal vein 2961
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001532 internal carotid artery internal carotid artery 448
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2959
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2959
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001627 middle cerebral artery middle cerebral artery 498
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2957
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2957
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0006663 hemiazygos vein hemiazygos vein 3001
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0011957 middle hepatic vein middle hepatic vein 2923
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0012318 anterior ethmoidal artery anterior ethmoidal artery 534
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2893
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2893
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001622 lacrimal artery lacrimal artery 570
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001138 superior mesenteric vein superior mesenteric vein 2815
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0012199 posterior intercostal vein posterior intercostal vein 3011
Expand Down Expand Up @@ -1234,7 +1234,7 @@ CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:00
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0013132 penicillar arteriole penicillar arteriole of spleen 813
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001360 deep circumflex iliac vein deep circumflex iliac vein 2605
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0035547 posterior ciliary vein vorticose vein #2 3132
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 posterior vena cava inferior vena cava 2599
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001072 inferior vena cava inferior vena cava 2599
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001624 anterior cerebral artery anterior cerebral artery 384
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0001361 femoral vein femoral vein 2607
CL:0000071 blood vessel endothelial cell blood vessel endothelial cell UBERON:0035374 small cardiac vein small cardiac vein 2597
Expand Down Expand Up @@ -1792,7 +1792,7 @@ CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011955 left he
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011955 left hepatic vein left hepatic vein 2730
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001654 supraorbital vein supraorbital vein 3088
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011955 left hepatic vein left hepatic vein 2728
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2726
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2726
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0006665 accessory hemiazygos vein accessory hemiazygos vein 2992
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0014686 angular vein angular vein 3090
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0006687 median sacral vein median sacral vein 2724
Expand Down Expand Up @@ -1864,15 +1864,15 @@ CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001142 left re
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0007156 inferior thyroid vein inferior thyroid vein 3052
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001639 hepatic portal vein hepatic portal vein 2850
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001639 hepatic portal vein hepatic portal vein 2848
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2958
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2958
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0035474 right subcostal vein right subcostal vein 3030
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001142 left renal vein left renal vein 2888
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001138 superior mesenteric vein superior mesenteric vein 2844
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:8410018 right colic vein right colic vein 2842
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:8410018 right colic vein right colic vein 2840
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001586 internal jugular vein internal jugular vein 3056
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001138 superior mesenteric vein superior mesenteric vein 2838
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2960
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2960
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001218 middle colic vein middle colic vein 2836
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001218 middle colic vein middle colic vein 2834
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001656 retromandibular vein retromandibular vein 3060
Expand All @@ -1887,7 +1887,7 @@ CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0005168 renal i
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0004719 kidney arcuate vein arcuate renal vein 2938
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0009887 interlobar vein interlobar renal vein 2936
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0012237 superior phrenic vein superior phrenic vein 3042
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2948
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2948
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0012196 right superior intercostal vein right superior intercostal vein 3034
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001140 renal vein renal vein 2934
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001140 renal vein renal vein 2932
Expand All @@ -1898,7 +1898,7 @@ CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011957 middle
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011957 middle hepatic vein middle hepatic vein 2926
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0007156 inferior thyroid vein inferior thyroid vein 3046
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011957 middle hepatic vein middle hepatic vein 2924
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2894
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2894
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0007156 inferior thyroid vein inferior thyroid vein 3048
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0011956 right hepatic vein right hepatic vein 2952
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0000443 left testicular vein left testicular vein 2892
Expand Down Expand Up @@ -2044,7 +2044,7 @@ CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001361 femoral
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001360 deep circumflex iliac vein deep circumflex iliac vein 2606
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001316 external iliac vein external iliac vein 2604
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001139 common iliac vein common iliac vein 2602
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 posterior vena cava inferior vena cava 2600
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0001072 inferior vena cava inferior vena cava 2600
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0006634 lingual vein lingual vein 3135
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0035374 small cardiac vein small cardiac vein 2598
CL:0002543 vein endothelial cell endothelial cell of vein UBERON:0009687 middle cardiac vein middle cardiac vein 2596
Expand Down
Loading

0 comments on commit 94bfa98

Please sign in to comment.