Remove duplicated files (#318)

* don't commit files from logs and graphs; the folders were added to .gitignore * remove files in graphs folder * remove files in logs * remove files in `owl/last_official_ASCTB_release` not used --------- Co-authored-by: Anita Caron <[email protected]>
hubmapconsortium · Mar 20, 2024 · 5a1e581 · 5a1e581
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diff --git a/.gitignore b/.gitignore
@@ -7,4 +7,6 @@ src/__pycache__/
 /site
 src/mirror/
 src/stats/
-src/ontologies
+src/ontologies
+logs
+graphs
diff --git a/docs/Blood/assets/ccf_Blood_graph.pdf b/docs/Blood/assets/ccf_Blood_graph.pdf
diff --git a/graphs/ccf_Anatomical_Systems_graph.pdf b/graphs/ccf_Anatomical_Systems_graph.pdf
diff --git a/graphs/ccf_Anatomical_Systems_graph.png b/graphs/ccf_Anatomical_Systems_graph.png
diff --git a/graphs/ccf_Blood_graph.pdf b/graphs/ccf_Blood_graph.pdf
diff --git a/graphs/ccf_Blood_graph.png b/graphs/ccf_Blood_graph.png
diff --git a/graphs/ccf_Blood_vasculature_graph.pdf b/graphs/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/ccf_Blood_vasculature_graph.png b/graphs/ccf_Blood_vasculature_graph.png
diff --git a/graphs/ccf_Bone-Marrow_graph.pdf b/graphs/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/ccf_Bone-Marrow_graph.png b/graphs/ccf_Bone-Marrow_graph.png
diff --git a/graphs/ccf_Brain_graph.pdf b/graphs/ccf_Brain_graph.pdf
diff --git a/graphs/ccf_Brain_graph.png b/graphs/ccf_Brain_graph.png
diff --git a/graphs/ccf_Eye_graph.pdf b/graphs/ccf_Eye_graph.pdf
diff --git a/graphs/ccf_Eye_graph.png b/graphs/ccf_Eye_graph.png
diff --git a/graphs/ccf_Fallopian_tube_graph.pdf b/graphs/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/ccf_Fallopian_tube_graph.png b/graphs/ccf_Fallopian_tube_graph.png
diff --git a/graphs/ccf_Heart_graph.pdf b/graphs/ccf_Heart_graph.pdf
diff --git a/graphs/ccf_Heart_graph.png b/graphs/ccf_Heart_graph.png
diff --git a/graphs/ccf_Kidney_graph.pdf b/graphs/ccf_Kidney_graph.pdf
diff --git a/graphs/ccf_Kidney_graph.png b/graphs/ccf_Kidney_graph.png
diff --git a/graphs/ccf_Knee_graph.pdf b/graphs/ccf_Knee_graph.pdf
diff --git a/graphs/ccf_Knee_graph.png b/graphs/ccf_Knee_graph.png
diff --git a/graphs/ccf_Large_intestine_graph.pdf b/graphs/ccf_Large_intestine_graph.pdf
diff --git a/graphs/ccf_Large_intestine_graph.png b/graphs/ccf_Large_intestine_graph.png
diff --git a/graphs/ccf_Liver_graph.pdf b/graphs/ccf_Liver_graph.pdf
diff --git a/graphs/ccf_Liver_graph.png b/graphs/ccf_Liver_graph.png
diff --git a/graphs/ccf_Lung_graph.pdf b/graphs/ccf_Lung_graph.pdf
diff --git a/graphs/ccf_Lung_graph.png b/graphs/ccf_Lung_graph.png
diff --git a/graphs/ccf_Lymph_node_graph.pdf b/graphs/ccf_Lymph_node_graph.pdf
diff --git a/graphs/ccf_Lymph_node_graph.png b/graphs/ccf_Lymph_node_graph.png
diff --git a/graphs/ccf_Lymph_vasculature_graph.pdf b/graphs/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/ccf_Lymph_vasculature_graph.png b/graphs/ccf_Lymph_vasculature_graph.png
diff --git a/graphs/ccf_Main_Bronchus_graph.pdf b/graphs/ccf_Main_Bronchus_graph.pdf
diff --git a/graphs/ccf_Main_Bronchus_graph.png b/graphs/ccf_Main_Bronchus_graph.png
diff --git a/graphs/ccf_Mammary_Gland_graph.pdf b/graphs/ccf_Mammary_Gland_graph.pdf
diff --git a/graphs/ccf_Mammary_Gland_graph.png b/graphs/ccf_Mammary_Gland_graph.png
diff --git a/graphs/ccf_Muscular_System_graph.pdf b/graphs/ccf_Muscular_System_graph.pdf
diff --git a/graphs/ccf_Muscular_System_graph.png b/graphs/ccf_Muscular_System_graph.png
diff --git a/graphs/ccf_Ovary_graph.pdf b/graphs/ccf_Ovary_graph.pdf
diff --git a/graphs/ccf_Ovary_graph.png b/graphs/ccf_Ovary_graph.png
diff --git a/graphs/ccf_Palatine_Tonsil_graph.pdf b/graphs/ccf_Palatine_Tonsil_graph.pdf
diff --git a/graphs/ccf_Palatine_Tonsil_graph.png b/graphs/ccf_Palatine_Tonsil_graph.png
diff --git a/graphs/ccf_Pancreas_graph.pdf b/graphs/ccf_Pancreas_graph.pdf
diff --git a/graphs/ccf_Pancreas_graph.png b/graphs/ccf_Pancreas_graph.png
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.pdf b/graphs/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/ccf_Peripheral_nervous_system_graph.png b/graphs/ccf_Peripheral_nervous_system_graph.png
diff --git a/graphs/ccf_Placenta_graph.pdf b/graphs/ccf_Placenta_graph.pdf
diff --git a/graphs/ccf_Placenta_graph.png b/graphs/ccf_Placenta_graph.png
diff --git a/graphs/ccf_Prostate_graph.pdf b/graphs/ccf_Prostate_graph.pdf
diff --git a/graphs/ccf_Prostate_graph.png b/graphs/ccf_Prostate_graph.png
diff --git a/graphs/ccf_Skeleton_graph.pdf b/graphs/ccf_Skeleton_graph.pdf
diff --git a/graphs/ccf_Skeleton_graph.png b/graphs/ccf_Skeleton_graph.png
diff --git a/graphs/ccf_Skin_graph.pdf b/graphs/ccf_Skin_graph.pdf
diff --git a/graphs/ccf_Skin_graph.png b/graphs/ccf_Skin_graph.png
diff --git a/graphs/ccf_Small_intestine_graph.pdf b/graphs/ccf_Small_intestine_graph.pdf
diff --git a/graphs/ccf_Small_intestine_graph.png b/graphs/ccf_Small_intestine_graph.png
diff --git a/graphs/ccf_Spinal_Cord_graph.pdf b/graphs/ccf_Spinal_Cord_graph.pdf
diff --git a/graphs/ccf_Spinal_Cord_graph.png b/graphs/ccf_Spinal_Cord_graph.png
diff --git a/graphs/ccf_Spleen_graph.pdf b/graphs/ccf_Spleen_graph.pdf
diff --git a/graphs/ccf_Spleen_graph.png b/graphs/ccf_Spleen_graph.png
diff --git a/graphs/ccf_Thymus_graph.pdf b/graphs/ccf_Thymus_graph.pdf
diff --git a/graphs/ccf_Thymus_graph.png b/graphs/ccf_Thymus_graph.png
diff --git a/graphs/ccf_Trachea_graph.pdf b/graphs/ccf_Trachea_graph.pdf
diff --git a/graphs/ccf_Trachea_graph.png b/graphs/ccf_Trachea_graph.png
diff --git a/graphs/ccf_Ureter_graph.pdf b/graphs/ccf_Ureter_graph.pdf
diff --git a/graphs/ccf_Ureter_graph.png b/graphs/ccf_Ureter_graph.png
diff --git a/graphs/ccf_Urinary_bladder_graph.pdf b/graphs/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/ccf_Urinary_bladder_graph.png b/graphs/ccf_Urinary_bladder_graph.png
diff --git a/graphs/ccf_Uterus_graph.pdf b/graphs/ccf_Uterus_graph.pdf
diff --git a/graphs/ccf_Uterus_graph.png b/graphs/ccf_Uterus_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_graph.png b/graphs/last_official_ASCTB_release/ccf_Blood_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.png b/graphs/last_official_ASCTB_release/ccf_Blood_vasculature_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.png b/graphs/last_official_ASCTB_release/ccf_Bone-Marrow_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Brain_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Brain_graph.png b/graphs/last_official_ASCTB_release/ccf_Brain_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Eye_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Eye_graph.png b/graphs/last_official_ASCTB_release/ccf_Eye_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.png b/graphs/last_official_ASCTB_release/ccf_Fallopian_tube_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Heart_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Heart_graph.png b/graphs/last_official_ASCTB_release/ccf_Heart_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Kidney_graph.png b/graphs/last_official_ASCTB_release/ccf_Kidney_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Knee_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Knee_graph.png b/graphs/last_official_ASCTB_release/ccf_Knee_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.png b/graphs/last_official_ASCTB_release/ccf_Large_intestine_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Liver_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Liver_graph.png b/graphs/last_official_ASCTB_release/ccf_Liver_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lung_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lung_graph.png b/graphs/last_official_ASCTB_release/ccf_Lung_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.png b/graphs/last_official_ASCTB_release/ccf_Lymph_node_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.png b/graphs/last_official_ASCTB_release/ccf_Lymph_vasculature_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ovary_graph.png b/graphs/last_official_ASCTB_release/ccf_Ovary_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.png b/graphs/last_official_ASCTB_release/ccf_Pancreas_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.png b/graphs/last_official_ASCTB_release/ccf_Peripheral_nervous_system_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Placenta_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Placenta_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Placenta_graph.png b/graphs/last_official_ASCTB_release/ccf_Placenta_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Prostate_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Prostate_graph.png b/graphs/last_official_ASCTB_release/ccf_Prostate_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Skin_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Skin_graph.png b/graphs/last_official_ASCTB_release/ccf_Skin_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.png b/graphs/last_official_ASCTB_release/ccf_Small_intestine_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Spleen_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Spleen_graph.png b/graphs/last_official_ASCTB_release/ccf_Spleen_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Thymus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Thymus_graph.png b/graphs/last_official_ASCTB_release/ccf_Thymus_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Ureter_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Ureter_graph.png b/graphs/last_official_ASCTB_release/ccf_Ureter_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.png b/graphs/last_official_ASCTB_release/ccf_Urinary_bladder_graph.png
diff --git a/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf b/graphs/last_official_ASCTB_release/ccf_Uterus_graph.pdf
diff --git a/graphs/last_official_ASCTB_release/ccf_Uterus_graph.png b/graphs/last_official_ASCTB_release/ccf_Uterus_graph.png
diff --git a/logs/Anatomical_Systems/Anatomical_Systems_AS_CT_strict_log.tsv b/logs/Anatomical_Systems/Anatomical_Systems_AS_CT_strict_log.tsv
diff --git a/logs/Anatomical_Systems/Anatomical_Systems_AS_has_part_CT_log.tsv b/logs/Anatomical_Systems/Anatomical_Systems_AS_has_part_CT_log.tsv
diff --git a/logs/Anatomical_Systems/README.md b/logs/Anatomical_Systems/README.md
diff --git a/logs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv b/logs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv