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@hms-dbmi

Harvard Medical School - Department of Biomedical Informatics

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  1. UpSetR UpSetR Public

    An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..

    R 780 160

  2. scde scde Public

    R package for analyzing single-cell RNA-seq data

    R 173 66

  3. viv viv Public

    Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.

    JavaScript 298 47

Repositories

Showing 10 of 368 repositories
  • vizarr Public

    A minimal Zarr image viewer based on Viv.

    hms-dbmi/vizarr’s past year of commit activity
    TypeScript 139 MIT 18 19 (1 issue needs help) 6 Updated Mar 9, 2025
  • gehlenborglab-website Public

    Code for Gehlenborg Lab website.

    hms-dbmi/gehlenborglab-website’s past year of commit activity
    TypeScript 9 MIT 40 13 0 Updated Mar 9, 2025
  • i2b2v2-webclient Public
    hms-dbmi/i2b2v2-webclient’s past year of commit activity
    JavaScript 2 4 1 0 Updated Mar 9, 2025
  • udi-grammar-py Public

    Python code for generating udi-grammar specifications.

    hms-dbmi/udi-grammar-py’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 8, 2025
  • udi-grammar Public

    The Universal Discovery Interface Grammar.

    hms-dbmi/udi-grammar’s past year of commit activity
    TypeScript 2 MIT 0 0 2 Updated Mar 7, 2025
  • PIC-SURE-Frontend Public

    A frontend for the PIC-SURE API

    hms-dbmi/PIC-SURE-Frontend’s past year of commit activity
    TypeScript 1 Apache-2.0 0 0 12 Updated Mar 7, 2025
  • Access-to-Data-using-PIC-SURE-API Public
    hms-dbmi/Access-to-Data-using-PIC-SURE-API’s past year of commit activity
    Jupyter Notebook 6 Apache-2.0 8 0 0 Updated Mar 7, 2025
  • ETLToolSuite-EntityGenerator Public

    This tool will generate Entity Files that can be used to load into Datasources.

    hms-dbmi/ETLToolSuite-EntityGenerator’s past year of commit activity
    Java 0 Apache-2.0 1 0 0 Updated Mar 5, 2025
  • pic-sure-bdc-release-control Public
    hms-dbmi/pic-sure-bdc-release-control’s past year of commit activity
    1 Apache-2.0 8 0 0 Updated Mar 4, 2025
  • pic-sure-hpds Public
    hms-dbmi/pic-sure-hpds’s past year of commit activity
    Java 3 Apache-2.0 6 0 9 Updated Mar 4, 2025
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