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@gagneurlab

Gagneur lab

To understand the genetic basis of gene regulation and its implication in diseases.

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  1. drop drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python 139 47

  2. OUTRIDER OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    R 49 11

  3. FRASER FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    R 41 22

  4. absplice absplice Public

    Python 34 4

  5. scooby scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    Python 18 2

Repositories

Showing 10 of 53 repositories
  • drop Public

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    gagneurlab/drop’s past year of commit activity
    Python 139 MIT 47 35 4 Updated Feb 20, 2025
  • AbExp Public
    gagneurlab/AbExp’s past year of commit activity
    Python 4 MIT 1 0 0 Updated Feb 20, 2025
  • AbExp-utils Public
    gagneurlab/AbExp-utils’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 20, 2025
  • FRASER Public

    FRASER - Find RAre Splicing Events in RNA-seq

    gagneurlab/FRASER’s past year of commit activity
    R 41 MIT 22 24 0 Updated Feb 18, 2025
  • OUTRIDER Public

    OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data

    gagneurlab/OUTRIDER’s past year of commit activity
    R 49 MIT 11 15 1 Updated Feb 17, 2025
  • PROTRIDER Public
    gagneurlab/PROTRIDER’s past year of commit activity
    Python 1 0 0 0 Updated Feb 10, 2025
  • funcRVP Public

    Bayesian genotype to phenotype model leveraging gene embeddings

    gagneurlab/funcRVP’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Jan 31, 2025
  • scooby Public

    scooby: Modeling multi-modal genomic profiles from DNA sequence at single-cell resolution.

    gagneurlab/scooby’s past year of commit activity
    Python 18 MIT 2 2 2 Updated Jan 10, 2025
  • gagneurlab/scooby_reproducibility’s past year of commit activity
    Jupyter Notebook 4 MIT 0 0 0 Updated Dec 20, 2024
  • splicemap Public
    gagneurlab/splicemap’s past year of commit activity
    Jupyter Notebook 19 4 2 0 Updated Oct 14, 2024

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