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  1. CaImAn CaImAn Public

    Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

    Python 637 370

  2. DeepFRI DeepFRI Public

    Deep functional residue identification

    Python 301 77

  3. finufft finufft Public

    Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3

    C++ 299 79

  4. CaImAn-MATLAB CaImAn-MATLAB Public

    Complete Matlab pipeline for large scale calcium imaging data analysis

    MATLAB 252 147

  5. NoRMCorre NoRMCorre Public

    Matlab routines for online non-rigid motion correction of calcium imaging data

    MATLAB 143 89

  6. deepblast deepblast Public

    Neural Networks for Protein Sequence Alignment

    Python 114 21

Repositories

Showing 10 of 179 repositories
  • FlatironMDCourse Public

    Flatiron Institute MD Course

    flatironinstitute/FlatironMDCourse’s past year of commit activity
    Jupyter Notebook 6 MIT 1 0 0 Updated Nov 9, 2024
  • spack Public Forked from spack/spack

    A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

    flatironinstitute/spack’s past year of commit activity
    Python 2 2,307 0 13 Updated Nov 9, 2024
  • nixpack Public

    nix+spack = nixpack (spanix?)

    flatironinstitute/nixpack’s past year of commit activity
    Nix 38 MIT 4 1 4 Updated Nov 9, 2024
  • disBatch Public

    Dynamic dispatch of a list of command-line tasks, locally or on a cluster. Supports retrying failed tasks, and adding/removing compute resources on-the-fly.

    flatironinstitute/disBatch’s past year of commit activity
    Python 39 Apache-2.0 9 8 1 Updated Nov 9, 2024
  • neurosift Public

    Browser-based NWB visualization and DANDI exploration

    flatironinstitute/neurosift’s past year of commit activity
    TypeScript 44 Apache-2.0 6 52 1 Updated Nov 9, 2024
  • FMM3D Public

    Flatiron Institute Fast Multipole Libraries --- This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in three dimensions, on a multi-core shared-memory machine.

    flatironinstitute/FMM3D’s past year of commit activity
    Fortran 98 38 21 1 Updated Nov 9, 2024
  • ManifoldEM Public

    Python package for determination of conformational continua of macromolecules from single-particle cryo-EM data

    flatironinstitute/ManifoldEM’s past year of commit activity
    Python 7 GPL-3.0 1 3 0 Updated Nov 8, 2024
  • jupyter-remote-desktop-proxy Public Forked from jupyterhub/jupyter-remote-desktop-proxy

    Run a Linux Desktop on a JupyterHub

    flatironinstitute/jupyter-remote-desktop-proxy’s past year of commit activity
    Python 0 BSD-3-Clause 112 0 0 Updated Nov 8, 2024
  • CryoLike Public
    flatironinstitute/CryoLike’s past year of commit activity
    Python 5 MIT 0 0 0 Updated Nov 7, 2024
  • sciware Public

    Learning materials for scientific software development

    flatironinstitute/sciware’s past year of commit activity
    HTML 78 35 2 0 Updated Nov 7, 2024
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