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First full package review #76

Merged
merged 632 commits into from
Oct 18, 2024
Merged

First full package review #76

merged 632 commits into from
Oct 18, 2024
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Jun 1, 2024

  1. fix: remove factor conversion in vaccine status

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 1, 2024
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  2. refac: test for cohort_match_ auxiliary function

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 1, 2024
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Commits on Jun 3, 2024

  1. tests for effectiveness

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  2. refac: input check using checkmate

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  3. refac: changed assert_class by test_class

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  4. fix: changed sapply for vapply gp()

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  5. typo and lintr

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  6. fix: snap for summary of effectiveness

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  7. feat: added tests for match_cohort() static

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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  8. roxygen2: updated and generated documentation of functions

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 3, 2024
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Commits on Jun 4, 2024

  1. fix: example for effectiveness

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 4, 2024
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  2. fix: removed unnecesary head() and negative time check

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 4, 2024
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  3. fix: added stats prefix where missing

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 4, 2024
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  4. roxygen: updated example in documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 4, 2024
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  5. feat: updated example in getstart for new estimation pipeline

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 4, 2024
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  6. Use standard (& expected) name for logo 

    This is necessary for the logo to be detected by pkgdown and r-universe
    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jun 4, 2024
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  7. Render favicon for pkgdown

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jun 4, 2024
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Commits on Jun 14, 2024

  1. fix: input check for vacc_name_col and df where immunizing_vaccine_na… 

    …me is created
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  2. feat: tests for make_immunization

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  3. added open arguments for generic method dataset

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  4. feat: test for match_summary comparing only two datasets

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  5. test for generic method

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  6. roxygen

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  7. proofread and check in methodology, details of example

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  8. fix: spelling checks

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  9. fix: added missing documentation of parameters and renamed parameters… 

    … from generic methods
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  10. lintr: replaced expect_equal by expect_identical

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  11. fix: missing parameter documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  12. fix: parameters of generic functions

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  13. roxygen: updated documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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  14. minor typo

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 14, 2024
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Commits on Jun 15, 2024

  1. refac: added general test for plot.effectiveness method

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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  2. Merge remote-tracking branch 'origin/main' into refac-effectiveness-m… 

    …atching
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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  3. fix: changed couple by pair

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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  4. lintr

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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  5. fix: inheritance in documentation of parameters

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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  6. fix: conflicts from repeated functions after merge

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 15, 2024
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Commits on Jun 18, 2024

  1. Add cff GHA workflow

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jun 18, 2024
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  2. Create CITATION.cff

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jun 18, 2024
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  3. Merge remote-tracking branch 'origin/main' into refac-effectiveness-m… 

    …atching
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 18, 2024
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Commits on Jun 21, 2024

  1. Update CITATION.cff

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 21, 2024
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Commits on Jun 24, 2024

  1. Merge branch 'main' into refac-effectiveness-matching

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Jun 24, 2024
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Commits on Jun 28, 2024

  1. fix: temporary commented lines of failing test

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jun 28, 2024
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Commits on Jul 16, 2024

  1. style: documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jul 16, 2024
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  2. fix: added missing checks for methods

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jul 16, 2024
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  3. refac: simplified for loop creating deltas

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jul 16, 2024
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  4. refac: replaced input parameter data by data_set and function dataset… 

    … by get_dataset
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Jul 16, 2024
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Commits on Jul 22, 2024

  1. Added helper functions to compare numbers in dataframes or named list… 

    …s with tolerance
    @jpavlich @davidsantiagoquevedo
    jpavlich authored and davidsantiagoquevedo committed Jul 22, 2024
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  2. Added test for balance and summary snapshots

    @jpavlich @davidsantiagoquevedo
    jpavlich authored and davidsantiagoquevedo committed Jul 22, 2024
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  3. Changed to expect_snapshot_value to check with tolerance

    @jpavlich @davidsantiagoquevedo
    jpavlich authored and davidsantiagoquevedo committed Jul 22, 2024
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  4. Streamline edge case handling

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jul 22, 2024
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  5. Fix typo in filename

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jul 22, 2024
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  6. Simplify formula creation

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jul 22, 2024
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  7. Simplify df column aggregation

    @Bisaloo @davidsantiagoquevedo
    Bisaloo authored and davidsantiagoquevedo committed Jul 22, 2024
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Commits on Aug 2, 2024

  1. refac: split coh_mtach_static to make maintenace easier

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  2. fixed: lintr

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  3. feat: iterative routine for static match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  4. feat: handler for warnings

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  5. tests of correctness for iterate_match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  6. feat: tests of correctness and warnings for rematch_

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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  7. updated: warning snaps iterate_match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 2, 2024
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Commits on Aug 4, 2024

  1. feat: test for capture_warnings()

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  2. fix: param in documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  3. fix: typo in function name

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  4. fix: removed unused parameter in documentation surv_plot

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  5. automatic update RoxygenNote

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  6. roxygen: render documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  7. fix: typo function name

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  8. refac: removed option for account for removed matches

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  9. updated snapshots without remove

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  10. added linebreak to warning message

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  11. feat: added iterative match to static_match pipeline

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  12. feat: warning handler controlling outs from iterative match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  13. updated snapshots with log of warnings

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  14. fix: removed unused parameter

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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  15. fix: updated snapshot for match_summary

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 4, 2024
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Commits on Aug 5, 2024

  1. fix: increased tolerance

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 5, 2024
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  2. fix: replaced expect_snapshot by expect_match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. feat: function for handling input validations

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 6, 2024
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  2. basic tests for check_dataset

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 6, 2024
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  3. feat: check for status and logical match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 6, 2024
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  4. basic expectation for inputs checks

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 6, 2024
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  5. feat: make_vaccineff_data - basic structure

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 6, 2024
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Commits on Aug 9, 2024

  1. added control parameter to print warnings log

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 9, 2024
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  2. Merge branch 'feat-iterative-match' into make-vaccineff-data

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 9, 2024
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Commits on Aug 13, 2024

  1. feat: added linelist object and match_cohort

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 13, 2024
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  2. updated package version

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 13, 2024
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Commits on Aug 18, 2024

  1. Update CITATION.cff

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 18, 2024
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  2. fix: as.data.frame in summary to avoid warnings for missing tags

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 18, 2024
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  3. added class declaration

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 18, 2024
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Commits on Aug 20, 2024

  1. added iteration number to return

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  2. feat: option for matched=NULL

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  3. added iteration number to match object

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  4. refac: summary, removed print for warnings log and added print for it… 

    …eration number
    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  5. refac: added iput for vaccine_data object and plot for matched cohort

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  6. feat: summary function for vaccineff_data object

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  7. fix: validation nearest and exact both missing

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  8. refac: removed parameters for colors. Set default values

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  9. Merge remote-tracking branch 'origin' into make-vaccineff-data

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  10. refac: split coh_mtach_static to make maintenace easier

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  11. fixed: lintr

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  12. feat: iterative routine for static match

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Aug 20, 2024
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  13. feat: handler for warnings

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  14. tests of correctness for iterate_match

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  15. feat: tests of correctness and warnings for rematch_

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  16. updated: warning snaps iterate_match

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  17. feat: test for capture_warnings()

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  18. fix: param in documentation

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  19. fix: typo in function name

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  20. fix: removed unused parameter in documentation surv_plot

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  21. automatic update RoxygenNote

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  22. roxygen: render documentation

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  23. fix: typo function name

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  24. refac: removed option for account for removed matches

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  25. updated snapshots without remove

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  26. added linebreak to warning message

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  27. feat: added iterative match to static_match pipeline

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  28. feat: warning handler controlling outs from iterative match

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  29. updated snapshots with log of warnings

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  30. fix: removed unused parameter

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  31. fix: updated snapshot for match_summary

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  32. fix: increased tolerance

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  33. fix: replaced expect_snapshot by expect_match

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  34. added control parameter to print warnings log

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  35. update documentation with details of handler and environment usage

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  36. fix: removed nolint

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  37. added example for warnings_log

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  38. updated wordlist

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  39. refac: simplified inputs using linelist object and vaccineff_data

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  40. feat: tag declaration for matched dataframe

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  41. merge: updated feats from iterative match

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Commits on Aug 24, 2024

  1. set km as ordered factor to guarantee correctness on plots

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  2. refac: simplified plot functions to depend on return form km_model

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  3. refac: simplified output. Returns VE, cox_model and km_model

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Commits on Aug 25, 2024

  1. Update CITATION.cff

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Commits on Aug 26, 2024

  1. typo: Kaplan-Meier

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  2. fix: forced numeric return to avoid problmes with cox model

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  3. refac: simplified inputs to vaccineff_data

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  4. Merge remote-tracking branch 'origin' into make-vaccineff-data

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  5. feat: added truncate time to event for estimate at

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  6. fix: removed inheriteParams

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  7. refac: made functions internal

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  8. refac: internal

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  9. refac: examples of plot_coverage. coh_coverage internal

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  10. refac: documentation and example

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  11. test for truncate tte at

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  12. feat: estimation at

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  13. added linelist to dependencies

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  14. roxygen2 update

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  15. update version

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  16. feat: print estimation point when at = NULL

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  17. warning message for PH assumption

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  18. style

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  19. refac: update selection of output from iterate_match

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  20. fix: replace order by ordered in levels

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  21. fix: handler validations

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  22. fix: assignation of status from strata levels

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  23. refac: deprecated unit causing problems with new versions of scales

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  24. refac: plot survival test using km object

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  25. fix: missplaced capture_warnings

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  26. refac: new pipeline for effectiveness() and estimation at time

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Commits on Aug 27, 2024

  1. refac: tests with new structure

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  2. update get started example

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  3. fix: examples and spelling errors

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  4. typo: documentation

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Commits on Aug 28, 2024

  1. feat: added null option to immunization_date_col

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  2. added null option to immunization_date_col

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  3. feat: added flow for match=FALSE

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  4. fix: wrong parameter name data->data_set and missing documentation

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Commits on Aug 29, 2024

  1. images time to event definition

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  2. basic structure of vignettes

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  3. test commit

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  4. doc: new references

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  5. doc: updating of vignettes

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  6. doc: updating of vignettes v2

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  7. doc: updating of cohort article

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  8. Add files via upload

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  9. Add files via upload

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  10. doc: updating of cohort article v2

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Commits on Aug 30, 2024

  1. added function to adjust time-to-event when no match is performed

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  2. added function to adjust time-to-event when no match is performed

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  3. refac: removed capture_warnings. Now used in make_vaccineff_data

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  4. refac: removed capture_warnings. Now used in make_vaccineff_data

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  5. refac: removed capture_warnings. Now used in make_vaccineff_data

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  6. fix: removed unused package call

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  7. refac: removed param start_cohort. Now, it is assigned by default usi… 

    …ng minimum of immunization
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  8. feat: update main vignette

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  9. fix: reference details

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  10. style: description of functions and package

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  11. fix: removed unused param in documentation

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  12. style: standarize use of HR

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  13. doc: Update cohort_design.Rmd

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Commits on Sep 2, 2024

  1. added news from v0.0.2

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  2. doc: fix references

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  3. doc: update name

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  4. Merge branch 'epiverse-trace:main' into documentation

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Commits on Sep 16, 2024

  1. test: deploy github actions from another branch

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  2. update package version

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  3. fix: ref year

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  4. news: iterative match

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  5. Update CITATION.cff

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  6. Update cohort_design.Rmd 

    doc: proof
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  7. Update references.json

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Commits on Sep 18, 2024

  1. Merge branch 'main' into v0.0.4

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  2. remove deprecated branch from triggers

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  3. deleted vignette, replaced in documentation PR

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  4. fix: VignetteIndexEntry

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  5. refac: moved to main vignettes folder to avoid issue with references

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Commits on Sep 19, 2024

  1. Update cohort_design.Rmd 

    doc
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  2. Update references.json 

    doc
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  3. Update cohort_design.Rmd 

    doc: the description of the  exact and nearest options.
    @ErikaCantor
    ErikaCantor committed Sep 19, 2024
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  4. Create references.bib.bib 

    doc: bib
    @ErikaCantor
    ErikaCantor committed Sep 19, 2024
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Commits on Sep 20, 2024

  1. Merge branch 'make-vaccineff-data' into documentation

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  2. Rename references.bib.bib to references.bib

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  3. Update references to .bib file

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  4. Moved file to main vignettes folder

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  5. Update bib, index entry and move to man vignettes

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  6. Update header and move to main vignettes

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 20, 2024
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  7. Merge branch 'ErikaCantor-documentation' into make-vaccineff-data

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 20, 2024
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  8. Merge branch 'v0.0.4' into make-vaccineff-data

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 20, 2024
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  9. renamed truncate_tte_at as truncate_time_to_event

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 20, 2024
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  10. style: changed VE by Vaccine Effectiveness

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 20, 2024
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  11. Update R/coh_effectiveness.R 

    Co-authored-by: GeraldineGomez <[email protected]>
    @davidsantiagoquevedo @GeraldineGomez
    davidsantiagoquevedo and GeraldineGomez authored Sep 20, 2024
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Commits on Sep 21, 2024

  1. updated wordlist

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  2. fix: links to images and articles

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  3. typo: and -> or

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  4. refac: renamed misc_ files as utils_

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  5. fix: redundant information in documentation and update references

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  6. upate references file

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  7. Automatic readme update

    @actions-user
    actions-user committed Sep 21, 2024
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  8. update new v0.0.4

    @davidsantiagoquevedo
    davidsantiagoquevedo authored Sep 21, 2024
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  9. update wordlist

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  10. Merge remote-tracking branch 'refs/remotes/origin/v0.0.4' into v0.0.4

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  11. Update CITATION.cff

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  12. fix: broken links

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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  13. remove unnecessary references header

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 21, 2024
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Commits on Sep 23, 2024

  1. rename time_to_event2.png to time-to-event2.png

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Sep 23, 2024
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Commits on Oct 1, 2024

  1. Update LICENSE.md 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 1, 2024
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  2. Update LICENSE 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 1, 2024
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  3. style documentation set_status() 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 1, 2024
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Commits on Oct 7, 2024

  1. typo on control message 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 7, 2024
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  2. style: last line vignettes/vaccineff.Rmd 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 7, 2024
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  3. typo: documentation 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 7, 2024
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  4. fix: removed reference to example data

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Oct 7, 2024
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  5. typo: consistency

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Oct 7, 2024
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  6. fix: typo thershold -> threshold 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 7, 2024
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  7. Merge remote-tracking branch 'refs/remotes/origin/review' into review

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Oct 7, 2024
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  8. fix: update threshold within function

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Oct 7, 2024
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  9. refac: definition of linelist object 

    Co-authored-by: Chris Hartgerink <[email protected]>
    @davidsantiagoquevedo @chartgerink
    davidsantiagoquevedo and chartgerink authored Oct 7, 2024
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  10. style: usethis::use_tidy_description()

    @davidsantiagoquevedo
    davidsantiagoquevedo committed Oct 7, 2024
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