[pre-commit.ci] auto fixes from pre-commit.com hooks

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datapartnership · May 13, 2024 · 74a4efb · 74a4efb
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Showing 16 changed files with 264 additions and 233 deletions.
diff --git a/notebooks/mobility/mobility.ipynb b/notebooks/mobility/mobility.ipynb
diff --git a/notebooks/nighttime-lights/analysis-2024/01_process_data/03_aggregate.R b/notebooks/nighttime-lights/analysis-2024/01_process_data/03_aggregate.R
@@ -40,7 +40,7 @@ for(adm_level in c("bound1", "bound2", "sez", "0", "1", "2", "3",
                    "0_rm_border_2_5km",
                    "0_rm_border_5km",
                    "0_rm_border_10km")){
-  
+
   if(adm_level == "sez"){
     roi_sf <- sez_sf
   } else if(adm_level == "bound1"){
@@ -56,12 +56,12 @@ for(adm_level in c("bound1", "bound2", "sez", "0", "1", "2", "3",
   } else if(adm_level == "border_10km"){
     roi_sf <- border_10km_sf
   } else if(adm_level == "rwi"){
-    
+
     source("https://raw.githubusercontent.com/ramarty/fast-functions/master/R/functions_in_chunks.R")
     rwi_df <- read_csv(file.path(data_dir, "Relative Wealth", "MMR_relative_wealth_index.csv"))
     rwi_sf <- st_as_sf(x = rwi_df, coords = c("longitude", "latitude"), crs = 4326)
     rwi_buff_sf <- rwi_sf %>% st_buffer_chunks(dist = 1200, chunk_size = 500)
-    
+
     roi_sf <- rwi_buff_sf
   } else if(adm_level == "0_rm_sez"){
     roi_sf <- adm0_rm_sez_sf
@@ -76,41 +76,41 @@ for(adm_level in c("bound1", "bound2", "sez", "0", "1", "2", "3",
   } else{
     roi_sf <- read_sf(file.path(gadm_dir, "rawdata", paste0("gadm41_MMR_",adm_level,".json")))
   }
-  
+
   # Loop through product -------------------------------------------------------
   # VNP46A2 = daily
   # VNP46A3 = monthly
   # VNP46A4 = annually
-  
+
   for(product in c("VNP46A4", "VNP46A3")){
-    
+
     ## Make directory to export files - organized by ROI and prduct
     OUT_DIR <- file.path(ntl_bm_dir, "FinalData", "aggregated", paste0("adm", adm_level, "_", product))
     dir.create(OUT_DIR)
-    
+
     # Loop through rasters -----------------------------------------------------
     r_name_vec <- file.path(ntl_bm_dir, "FinalData", paste0(product, "_rasters")) %>% list.files()
-    
+
     for(r_name_i in r_name_vec){
-      
+
       OUT_FILE <- file.path(OUT_DIR, r_name_i %>% str_replace_all(".tif", ".Rds"))
-      
+
       ## Check if file exists
       if(!file.exists(OUT_FILE)){
-        
+
         ## Load raster and create rasters for just gas flaring and non gas flaring locations
         r <- raster(file.path(ntl_bm_dir, "FinalData", paste0(product, "_rasters"), r_name_i))
-        
+
         ## Extract data
         ntl_df <- exact_extract(r, roi_sf, fun = c("mean", "median", "sum"))
         roi_sf$ntl_bm_mean   <- ntl_df$mean
         roi_sf$ntl_bm_median <- ntl_df$median
         roi_sf$ntl_bm_sum    <- ntl_df$sum
-        
+
         ## Prep for export
         roi_df <- roi_sf %>%
           st_drop_geometry()
-        
+
         ## Add date
         if(product == "VNP46A2"){
           year <- r_name_i %>% substring(12,15) %>% as.numeric()
@@ -122,7 +122,7 @@ for(adm_level in c("bound1", "bound2", "sez", "0", "1", "2", "3",
             paste0("-01") %>%
             ymd()
         }
-        
+
         if(product == "VNP46A3"){
           date_r <- r_name_i %>%
             str_replace_all("VNP46A3_t", "") %>%
@@ -131,17 +131,17 @@ for(adm_level in c("bound1", "bound2", "sez", "0", "1", "2", "3",
             paste0("-01") %>%
             ymd()
         }
-        
+
         if(product == "VNP46A4"){
           # Just grab year
           date_r <- r_name_i %>%
             str_replace_all("VNP46A4_t", "") %>%
             str_replace_all(".tif", "") %>%
             as.numeric()
         }
-        
+
         roi_df$date <- date_r
-        
+
         ## Export
         saveRDS(roi_df, OUT_FILE)
       }

diff --git a/notebooks/nighttime-lights/analysis-2024/02_analysis/ntl_analysis.html b/notebooks/nighttime-lights/analysis-2024/02_analysis/ntl_analysis.html
@@ -19,7 +19,7 @@
 ul.task-list{list-style: none;}
 ul.task-list li input[type="checkbox"] {
   width: 0.8em;
-  margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */ 
+  margin: 0 0.8em 0.2em -1em; /* quarto-specific, see https://github.com/quarto-dev/quarto-cli/issues/4556 */
   vertical-align: middle;
 }
 /* CSS for syntax highlighting */
@@ -90,7 +90,7 @@
 <div id="quarto-margin-sidebar" class="sidebar margin-sidebar">
   <nav id="TOC" role="doc-toc" class="toc-active">
     <h2 id="toc-title">Table of contents</h2>
-   
+
   <ul>
   <li><a href="#data" id="toc-data" class="nav-link active" data-scroll-target="#data">Data</a></li>
   <li><a href="#methodology" id="toc-methodology" class="nav-link" data-scroll-target="#methodology">Methodology</a></li>
@@ -137,17 +137,17 @@ <h1 class="title">Nighttime Lights Analysis</h1>
              <p>Data Lab </p>
           </div>
   </div>
-    
+
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
       <p class="date">April 18, 2024</p>
     </div>
   </div>
-  
-    
+
+
   </div>
-  
+
 
 </header>
 
@@ -982,7 +982,7 @@ <h1>Limitations</h1>
       toggleBodyColorMode(bsSheetEl);
     }
   }
-  toggleBodyColorPrimary();  
+  toggleBodyColorPrimary();
   const icon = "";
   const anchorJS = new window.AnchorJS();
   anchorJS.options = {
@@ -992,7 +992,7 @@ <h1>Limitations</h1>
   anchorJS.add('.anchored');
   const isCodeAnnotation = (el) => {
     for (const clz of el.classList) {
-      if (clz.startsWith('code-annotation-')) {                     
+      if (clz.startsWith('code-annotation-')) {
         return true;
       }
     }
@@ -1023,11 +1023,11 @@ <h1>Limitations</h1>
       button.setAttribute("data-bs-toggle", "tooltip");
       button.setAttribute("data-bs-placement", "left");
       button.setAttribute("data-bs-title", "Copied!");
-      tooltip = new bootstrap.Tooltip(button, 
-        { trigger: "manual", 
+      tooltip = new bootstrap.Tooltip(button,
+        { trigger: "manual",
           customClass: "code-copy-button-tooltip",
           offset: [0, -8]});
-      tooltip.show();    
+      tooltip.show();
     }
     setTimeout(function() {
       if (tooltip) {
@@ -1057,7 +1057,7 @@ <h1>Limitations</h1>
       theme: 'quarto',
       placement: 'bottom-start'
     };
-    window.tippy(el, config); 
+    window.tippy(el, config);
   }
   const noterefs = window.document.querySelectorAll('a[role="doc-noteref"]');
   for (var i=0; i<noterefs.length; i++) {
@@ -1102,7 +1102,7 @@ <h1>Limitations</h1>
             height = bottom - top;
           }
           if (top !== null && height !== null && parent !== null) {
-            // cook up a div (if necessary) and position it 
+            // cook up a div (if necessary) and position it
             let div = window.document.getElementById("code-annotation-line-highlight");
             if (div === null) {
               div = window.document.createElement("div");
@@ -1200,4 +1200,4 @@ <h1>Limitations</h1>
 
 
 
-</body></html>
+</body></html>