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Add software DOI and other minor touch-ups #302

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Add software DOI and other minor touch-ups #302

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d13e5d3
add doi info and minor touch-ups
d33bs Feb 18, 2025
45844f9
change to shorter name
d33bs Feb 18, 2025
10a202e
linting
d33bs Feb 18, 2025
8849351
update name
d33bs Feb 18, 2025
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4 changes: 2 additions & 2 deletions .github/workflows/test.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,7 +11,7 @@ on:
- cron: "0 7 * * 3"

jobs:
run_tests:
tests:
strategy:
matrix:
# matrixed execution for parallel gh-action performance increases
Expand Down Expand Up @@ -47,7 +47,7 @@ jobs:
# smaller tests first.
run_large_data_tests:
runs-on: ubuntu-22.04
needs: run_tests
needs: tests
steps:
- name: Checkout
uses: actions/checkout@v4
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2 changes: 1 addition & 1 deletion .pre-commit-config.yaml
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Expand Up @@ -50,7 +50,7 @@ repos:
hooks:
- id: blacken-docs
- repo: https://github.com/PyCQA/bandit
rev: 1.8.2
rev: 1.8.3
hooks:
- id: bandit
args: ["-c", "pyproject.toml"]
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7 changes: 7 additions & 0 deletions CITATION.cff
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Expand Up @@ -17,11 +17,18 @@ authors:
- given-names: Erik
family-names: Serrano
orcid: 'https://orcid.org/0000-0003-4188-9080'
- given-names: Vincent
family-names: Rubinetti
orcid: 'https://orcid.org/0000-0002-4655-3773'
- given-names: Gregory
family-names: Way
orcid: 'https://orcid.org/0000-0002-0503-9348'
repository-code: 'https://github.com/cytomining/CytoTable'
url: 'https://cytomining.github.io/CytoTable/'
identifiers:
- description: Software DOI
type: doi
value: "10.5281/zenodo.14888111"
abstract: >-
Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
keywords:
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5 changes: 5 additions & 0 deletions readme.md
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Expand Up @@ -2,6 +2,11 @@

# CytoTable

![PyPI - Version](https://img.shields.io/pypi/v/cytotable)
[![Build Status](https://github.com/cytomining/cytotable/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/cytomining/cytotable/actions/workflows/test.yml?query=branch%3Amain)
[![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
[![Software DOI badge](https://zenodo.org/badge/DOI/10.5281/zenodo.14888111.svg)](https://doi.org/10.5281/zenodo.14888111)

![dataflow](https://raw.githubusercontent.com/cytomining/cytotable/main/docs/source/_static/dataflow.svg?raw=true)
_Diagram showing data flow relative to this project._

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