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Add conda yaml without specific builds. Fix #6.
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@cxji
cxji committed Oct 10, 2023
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -5,4 +5,4 @@ To reproduce the experiments in this paper:
2. The `data_extraction` directory contains a pipeline to extract data for the large-scale study.
3. The `temporal_shift_scan` directory implements our algorithms to test and scan for temporal shift.

The `utils` directory contains supporting functions. To reproduce our conda environment, run `conda create --prefix NEWENV --file conda_env_pkgs.txt`.
The `utils` directory contains supporting functions. To reproduce our conda environment on Linux, run `conda create --prefix NEWENV --file conda_env_pkgs.txt`. For other operating systems, please use `conda_env_no_build.yml`. The path to the conda environment needs to specified on the first and last line.
238 changes: 238 additions & 0 deletions conda_env_no_build.yml
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name: # path to environment
channels:
- defaults
dependencies:
- defaults/linux-64::_libgcc_mutex==0.1=main
- conda-forge/linux-64::_py-xgboost-mutex==2.0=cpu_0
- defaults/linux-64::_pytorch_select==0.1=cpu_0
- defaults/linux-64::blas==1.0=mkl
- anaconda/linux-64::ca-certificates==2022.07.19=h06a4308_0
- defaults/linux-64::cudatoolkit==10.1.243=h6bb024c_0
- defaults/linux-64::intel-openmp==2021.4.0=h06a4308_3561
- defaults/linux-64::ld_impl_linux-64==2.35.1=h7274673_9
- conda-forge/linux-64::libgfortran5==11.2.0=h5c6108e_14
- defaults/linux-64::libstdcxx-ng==9.3.0=hd4cf53a_17
- conda-forge/linux-64::pandoc==2.17.1.1=ha770c72_0
- conda-forge/linux-64::libgfortran-ng==11.2.0=h69a702a_14
- defaults/linux-64::libgomp==9.3.0=h5101ec6_17
- defaults/linux-64::mkl==2021.4.0=h06a4308_640
- defaults/linux-64::_openmp_mutex==4.5=1_gnu
- conda-forge/linux-64::libblas==3.9.0=12_linux64_mkl
- conda-forge/linux-64::libcblas==3.9.0=12_linux64_mkl
- defaults/linux-64::libgcc-ng==9.3.0=h5101ec6_17
- conda-forge/linux-64::liblapack==3.9.0=12_linux64_mkl
- conda-forge/linux-64::abseil-cpp==20210324.1=h9c3ff4c_0
- conda-forge/linux-64::aws-c-common==0.6.2=h7f98852_0
- conda-forge/linux-64::bzip2==1.0.8=h7f98852_4
- defaults/linux-64::c-ares==1.18.1=h7f8727e_0
- conda-forge/linux-64::expat==2.2.10=h9c3ff4c_0
- conda-forge/linux-64::gflags==2.2.2=he1b5a44_1004
- defaults/linux-64::giflib==5.2.1=h7b6447c_0
- conda-forge/linux-64::icu==58.2=hf484d3e_1000
- defaults/linux-64::jpeg==9d=h7f8727e_0
- conda-forge/linux-64::libbrotlicommon==1.0.9=h7f98852_5
- conda-forge/linux-64::libev==4.33=h516909a_1
- defaults/linux-64::libffi==3.3=he6710b0_2
- conda-forge/linux-64::libsodium==1.0.18=h36c2ea0_1
- conda-forge/linux-64::libutf8proc==2.6.1=h7f98852_0
- defaults/linux-64::libuuid==1.0.3=h7f8727e_2
- defaults/linux-64::libuv==1.40.0=h7b6447c_0
- defaults/linux-64::libwebp-base==1.2.2=h7f8727e_0
- defaults/linux-64::libxgboost==1.5.0=h295c915_1
- defaults/linux-64::lz4-c==1.9.3=h295c915_1
- defaults/linux-64::ncurses==6.3=h7f8727e_2
- anaconda/linux-64::openssl==1.1.1q=h7f8727e_0
- conda-forge/linux-64::pcre==8.45=h9c3ff4c_0
- conda-forge/linux-64::pthread-stubs==0.4=h36c2ea0_1001
- conda-forge/linux-64::re2==2021.04.01=h9c3ff4c_0
- conda-forge/linux-64::snappy==1.1.8=he1b5a44_3
- defaults/linux-64::tbb==2021.5.0=hd09550d_0
- conda-forge/linux-64::xorg-libxau==1.0.9=h7f98852_0
- conda-forge/linux-64::xorg-libxdmcp==1.1.3=h7f98852_0
- conda-forge/linux-64::xxhash==0.8.0=h7f98852_3
- defaults/linux-64::xz==5.2.5=h7b6447c_0
- conda-forge/linux-64::yaml==0.2.5=h516909a_0
- defaults/linux-64::zlib==1.2.11=h7f8727e_4
- conda-forge/linux-64::aws-c-cal==0.5.11=h95a6274_0
- conda-forge/linux-64::aws-checksums==0.1.11=ha31a3da_7
- defaults/linux-64::glib==2.69.1=h4ff587b_1
- conda-forge/linux-64::glog==0.5.0=h48cff8f_0
- conda-forge/linux-64::libbrotlidec==1.0.9=h7f98852_5
- conda-forge/linux-64::libbrotlienc==1.0.9=h7f98852_5
- defaults/linux-64::libedit==3.1.20210910=h7f8727e_0
- conda-forge/linux-64::libevent==2.1.10=hcdb4288_3
- conda-forge/linux-64::libllvm11==11.1.0=hf817b99_2
- defaults/linux-64::libnghttp2==1.46.0=hce63b2e_0
- defaults/linux-64::libpng==1.6.37=hbc83047_0
- conda-forge/linux-64::libprotobuf==3.16.0=h780b84a_0
- defaults/linux-64::libssh2==1.9.0=h1ba5d50_1
- conda-forge/linux-64::libxcb==1.13=h7f98852_1003
- defaults/linux-64::libxml2==2.9.12=h03d6c58_0
- defaults/linux-64::readline==8.1.2=h7f8727e_1
- conda-forge/linux-64::s2n==1.0.10=h9b69904_0
- defaults/linux-64::tk==8.6.11=h1ccaba5_0
- conda-forge/linux-64::zeromq==4.3.4=h9c3ff4c_0
- defaults/linux-64::zstd==1.4.9=haebb681_0
- conda-forge/linux-64::aws-c-io==0.10.5=hfb6a706_0
- conda-forge/linux-64::brotli-bin==1.0.9=h7f98852_5
- defaults/linux-64::dbus==1.13.18=hb2f20db_0
- defaults/linux-64::freetype==2.11.0=h70c0345_0
- conda-forge/linux-64::grpc-cpp==1.37.1=h2519f57_2
- defaults/linux-64::gstreamer==1.14.0=h28cd5cc_2
- defaults/linux-64::krb5==1.19.2=hac12032_0
- conda-forge/linux-64::libthrift==0.14.1=he6d91bd_2
- defaults/linux-64::libtiff==4.2.0=h85742a9_0
- anaconda/linux-64::libxslt==1.1.34=hc22bd24_0
- conda-forge/linux-64::orc==1.6.7=h89a63ab_2
- defaults/linux-64::sqlite==3.38.0=hc218d9a_0
- conda-forge/linux-64::aws-c-event-stream==0.2.7=h3541f99_13
- conda-forge/linux-64::brotli==1.0.9=h7f98852_5
- defaults/linux-64::fontconfig==2.13.1=h6c09931_0
- defaults/linux-64::gst-plugins-base==1.14.0=hbbd80ab_1
- defaults/linux-64::lcms2==2.12=h3be6417_0
- defaults/linux-64::libcurl==7.80.0=h0b77cf5_0
- defaults/linux-64::libpq==12.9=hc2c5182_1
- defaults/linux-64::libwebp==1.2.2=h55f646e_0
- defaults/linux-64::python==3.8.12=h12debd9_0
- conda-forge/noarch::async-timeout==3.0.1=py_1000
- conda-forge/noarch::attrs==21.4.0=pyhd8ed1ab_0
- conda-forge/linux-64::aws-sdk-cpp==1.8.186=hb4091e7_3
- conda-forge/noarch::backcall==0.2.0=pyh9f0ad1d_0
- conda-forge/noarch::backports==1.0=py_2
- conda-forge/noarch::cached_property==1.5.2=pyha770c72_1
- anaconda/linux-64::certifi==2022.6.15=py38h06a4308_0
- conda-forge/noarch::charset-normalizer==2.0.12=pyhd8ed1ab_0
- conda-forge/noarch::colorama==0.4.4=pyh9f0ad1d_0
- conda-forge/noarch::cycler==0.11.0=pyhd8ed1ab_0
- conda-forge/noarch::dataclasses==0.8=pyhc8e2a94_3
- conda-forge/noarch::decorator==5.1.1=pyhd8ed1ab_0
- conda-forge/noarch::defusedxml==0.7.1=pyhd8ed1ab_0
- conda-forge/noarch::dill==0.3.4=pyhd8ed1ab_0
- conda-forge/noarch::entrypoints==0.4=pyhd8ed1ab_0
- conda-forge/noarch::executing==0.8.3=pyhd8ed1ab_0
- conda-forge/noarch::filelock==3.6.0=pyhd8ed1ab_0
- conda-forge/noarch::flit-core==3.7.1=pyhd8ed1ab_0
- conda-forge/noarch::fsspec==2022.2.0=pyhd8ed1ab_0
- defaults/linux-64::greenlet==1.1.1=py38h295c915_0
- conda-forge/linux-64::hdf5==1.10.6=nompi_h6a2412b_1114
- conda-forge/noarch::idna==3.3=pyhd8ed1ab_0
- conda-forge/noarch::ipython_genutils==0.2.0=py_1
- defaults/noarch::joblib==1.1.0=pyhd3eb1b0_0
- defaults/linux-64::kiwisolver==1.3.2=py38h295c915_0
- defaults/linux-64::llvmlite==0.37.0=py38h295c915_1
- anaconda/linux-64::lxml==4.8.0=py38h1f438cf_0
- conda-forge/noarch::munkres==1.1.4=pyh9f0ad1d_0
- conda-forge/noarch::nest-asyncio==1.5.4=pyhd8ed1ab_0
- defaults/linux-64::ninja==1.10.2=py38hd09550d_3
- conda-forge/noarch::pandocfilters==1.5.0=pyhd8ed1ab_0
- conda-forge/noarch::parso==0.8.3=pyhd8ed1ab_0
- conda-forge/noarch::pickleshare==0.7.5=py_1003
- defaults/linux-64::pillow==9.0.1=py38h22f2fdc_0
- conda-forge/noarch::prometheus_client==0.13.1=pyhd8ed1ab_0
- defaults/linux-64::psycopg2==2.8.6=py38h3c74f83_1
- conda-forge/noarch::ptyprocess==0.7.0=pyhd3deb0d_0
- conda-forge/noarch::pure_eval==0.2.2=pyhd8ed1ab_0
- conda-forge/noarch::pycparser==2.21=pyhd8ed1ab_0
- conda-forge/noarch::pyparsing==3.0.7=pyhd8ed1ab_0
- defaults/linux-64::pyrsistent==0.18.0=py38heee7806_0
- conda-forge/linux-64::python_abi==3.8=2_cp38
- conda-forge/noarch::pytz==2021.3=pyhd8ed1ab_0
- defaults/linux-64::qt==5.9.7=h5867ecd_1
- defaults/linux-64::regex==2021.11.2=py38h7f8727e_0
- conda-forge/noarch::send2trash==1.8.0=pyhd8ed1ab_0
- defaults/linux-64::sip==4.19.13=py38h295c915_0
- defaults/noarch::six==1.16.0=pyhd3eb1b0_1
- conda-forge/noarch::soupsieve==2.3.1=pyhd8ed1ab_0
- conda-forge/noarch::testpath==0.6.0=pyhd8ed1ab_0
- defaults/noarch::threadpoolctl==2.2.0=pyh0d69192_0
- defaults/linux-64::tokenizers==0.10.3=py38hb317417_1
- conda-forge/noarch::traitlets==5.1.1=pyhd8ed1ab_0
- defaults/noarch::typing_extensions==3.10.0.2=pyh06a4308_0
- conda-forge/noarch::webencodings==0.5.1=py_1
- defaults/noarch::wheel==0.37.1=pyhd3eb1b0_0
- conda-forge/noarch::zipp==3.7.0=pyhd8ed1ab_1
- conda-forge/noarch::asttokens==2.0.5=pyhd8ed1ab_0
- conda-forge/noarch::beautifulsoup4==4.10.0=pyha770c72_0
- conda-forge/noarch::cached-property==1.5.2=hd8ed1ab_1
- defaults/linux-64::cffi==1.15.0=py38hd667e15_1
- conda-forge/linux-64::chardet==4.0.0=py38h578d9bd_2
- conda-forge/linux-64::click==8.0.4=py38h578d9bd_0
- defaults/noarch::fonttools==4.25.0=pyhd3eb1b0_0
- conda-forge/linux-64::importlib-metadata==4.11.3=py38h578d9bd_0
- conda-forge/noarch::importlib_resources==5.4.0=pyhd8ed1ab_0
- conda-forge/linux-64::jedi==0.18.1=py38h578d9bd_0
- conda-forge/linux-64::jupyter_core==4.9.2=py38h578d9bd_0
- conda-forge/linux-64::markupsafe==2.0.1=py38h497a2fe_0
- conda-forge/noarch::matplotlib-inline==0.1.3=pyhd8ed1ab_0
- conda-forge/linux-64::mistune==0.8.4=py38h497a2fe_1004
- defaults/linux-64::mkl-service==2.4.0=py38h7f8727e_0
- conda-forge/linux-64::multidict==5.1.0=py38h497a2fe_1
- conda-forge/linux-64::multiprocess==0.70.12.2=py38h497a2fe_0
- conda-forge/linux-64::numpy==1.20.3=py38h9894fe3_1
- conda-forge/noarch::packaging==21.3=pyhd8ed1ab_0
- conda-forge/noarch::pexpect==4.8.0=pyh9f0ad1d_2
- defaults/linux-64::pyqt==5.9.2=py38h05f1152_4
- conda-forge/linux-64::pysocks==1.7.1=py38h578d9bd_4
- conda-forge/noarch::python-dateutil==2.8.2=pyhd8ed1ab_0
- conda-forge/linux-64::python-xxhash==2.0.2=py38h497a2fe_0
- conda-forge/linux-64::pyyaml==5.4.1=py38h497a2fe_0
- conda-forge/linux-64::pyzmq==19.0.2=py38ha71036d_2
- defaults/linux-64::setuptools==58.0.4=py38h06a4308_0
- conda-forge/linux-64::sqlalchemy==1.4.13=py38h497a2fe_0
- conda-forge/linux-64::tornado==6.1=py38h497a2fe_1
- conda-forge/noarch::tqdm==4.63.0=pyhd8ed1ab_0
- defaults/noarch::typing-extensions==3.10.0.2=hd3eb1b0_0
- defaults/linux-64::argon2-cffi-bindings==21.2.0=py38h7f8727e_0
- conda-forge/linux-64::arrow-cpp==3.0.0=py38h8e6f228_13_cpu
- conda-forge/noarch::backports.functools_lru_cache==1.6.4=pyhd8ed1ab_0
- conda-forge/noarch::bleach==4.1.0=pyhd8ed1ab_0
- conda-forge/linux-64::brotlipy==0.7.0=py38h497a2fe_1001
- conda-forge/linux-64::cryptography==35.0.0=py38ha5dfef3_0
- conda-forge/linux-64::h5py==3.2.1=nompi_py38h9915d05_100
- conda-forge/noarch::importlib_metadata==4.11.3=hd8ed1ab_0
- conda-forge/noarch::jinja2==3.0.3=pyhd8ed1ab_0
- conda-forge/noarch::jsonschema==4.4.0=pyhd8ed1ab_0
- conda-forge/noarch::jupyter_client==7.1.2=pyhd8ed1ab_0
- defaults/linux-64::matplotlib-base==3.5.1=py38ha18d171_1
- defaults/linux-64::mkl_fft==1.3.1=py38hd3c417c_0
- defaults/linux-64::mkl_random==1.2.2=py38h51133e4_0
- defaults/linux-64::numba==0.54.1=py38h51133e4_0
- conda-forge/linux-64::pandas==1.2.3=py38h51da96c_0
- defaults/linux-64::pip==21.2.4=py38h06a4308_0
- conda-forge/noarch::pygments==2.11.2=pyhd8ed1ab_0
- pytorch/linux-64::pytorch==1.7.1=py3.8_cuda10.1.243_cudnn7.6.3_0
- conda-forge/noarch::sacremoses==0.0.49=pyhd8ed1ab_0
- conda-forge/linux-64::scipy==1.5.3=py38hb2138dd_0
- conda-forge/noarch::stack_data==0.2.0=pyhd8ed1ab_0
- conda-forge/linux-64::terminado==0.13.3=py38h578d9bd_0
- conda-forge/linux-64::yarl==1.6.3=py38h497a2fe_2
- conda-forge/linux-64::aiohttp==3.7.4.post0=py38h497a2fe_0
- conda-forge/noarch::argon2-cffi==21.3.0=pyhd8ed1ab_0
- conda-forge/noarch::jupyterlab_pygments==0.1.2=pyh9f0ad1d_0
- conda-forge/linux-64::matplotlib==3.5.1=py38h578d9bd_0
- conda-forge/noarch::nbformat==5.2.0=pyhd8ed1ab_0
- conda-forge/noarch::parquet-cpp==1.5.1=2
- conda-forge/noarch::patsy==0.5.2=pyhd8ed1ab_0
- conda-forge/noarch::pyopenssl==22.0.0=pyhd8ed1ab_0
- defaults/linux-64::scikit-learn==1.0.2=py38h51133e4_1
- conda-forge/noarch::seaborn-base==0.11.2=pyhd8ed1ab_0
- conda-forge/noarch::sparse==0.13.0=pyhd8ed1ab_0
- pytorch/linux-64::torchaudio==0.7.2=py38
- defaults/linux-64::torchvision==0.8.2=cpu_py38ha229d99_0
- conda-forge/noarch::wcwidth==0.2.5=pyh9f0ad1d_2
- conda-forge/noarch::nbclient==0.5.13=pyhd8ed1ab_0
- defaults/noarch::nbconvert==5.4.1=py_2
- conda-forge/noarch::prompt-toolkit==3.0.27=pyha770c72_0
- defaults/linux-64::py-xgboost==1.5.0=py38h06a4308_1
- conda-forge/linux-64::pyarrow==3.0.0=py38hc9229eb_13_cpu
- defaults/linux-64::statsmodels==0.12.2=py38h27cfd23_0
- conda-forge/noarch::urllib3==1.26.9=pyhd8ed1ab_0
- conda-forge/linux-64::ipython==8.1.1=py38h578d9bd_0
- conda-forge/noarch::requests==2.27.1=pyhd8ed1ab_0
- conda-forge/noarch::seaborn==0.11.2=hd8ed1ab_0
- conda-forge/noarch::huggingface_hub==0.4.0=pyhd8ed1ab_0
- conda-forge/linux-64::ipykernel==5.5.5=py38hd0cf306_0
- conda-forge/noarch::datasets==1.18.3=pyhd8ed1ab_0
- conda-forge/noarch::notebook==6.4.10=pyha770c72_0
- conda-forge/noarch::transformers==4.16.2=pyhd8ed1ab_0
prefix: # path to environment

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