This repository tracks the official dissertation. The goal is to
provide a fully reproducible and digitally-born dissertation, which I
can easily export to paper format to fullfill my university's
requirements. The bookdown-borne
dissertation is a work in progress but already available at the
static webpage for this
repository.
You can rerun the entire compilation process by running the following
from R, with the repository as the working directory (assuming you
have all dependencies!)
bookdown::render_book('index.Rmd', "bookdown::pdf_book")The R dependencies are AFAIK
bookdown
car
devtools
ggplot2
kableExtra
knitr
latex2exp
magrittr
pROC
plyr
viridis
xtable
Remember that there might be other dependencies like pandoc, pandoc-citeproc, and some LaTeX dependencies I haven't included and depend on your installation.
For the PDF, I did some manual adjustments to get to the final version because LaTeX...
Contributions towards understanding and building sustainable science
- Introduction chapter short
- Ready
- Preprint: NA
- Status: published in ScienceOpen (license: CC-BY 4.0)
- Data: NA
- Reproducibility packet:
- License: CC BY 4.0
- Bookdown-ready
- Preprint: PeerJ preprints
- Status: published in PeerJ
- Data: data from original Head et al. paper, available on Dryad
- Reproducibility packet:
- License: CC 0 rights waiver
- Bookdown-ready
- Preprint: PeerJ preprints
- Status: published in PeerJ
- Data: https://osf.io/gdr4q/
- Reproducibility packet: https://osf.io/4d2g9/
- License: CC BY 4.0
- Bookdown-ready
- Preprint: PsyArxiv
- Status: published in Collabra
- Data: direct downloads linked in Sweave file
- Reproducibility packet:
- License: CC BY 4.0
- Bookdown-ready
- Preprint: MDPI preprints
- Status: published in Data (license: CC-BY 4.0)
- Data: EASY-DANS
- Reproducibility packet:
- License: CC BY 4.0
- Bookdown-ready
- Preprint: PsyArxiv
- Status: Ready to submit
- Data: GitHub and archived in the reproducibility packet
- Reproducibility packet:
- Bookdown-ready
- Extracting data from vector figures in scholarly articles
- Preprint: https://arxiv.org/abs/1709.02261
- Status: manuscript that underwent public feedback
- Data: see reproducibility packet
- Reproducibility packet:
- License: CC 0 rights waiver
- Bookdown-ready
- "As-you-go" instead of "after-the-fact": A network approach to scholarly communication and evaluation
- Preprint: https://doi.org/10.7287/peerj.preprints.26462v1
- Status: published in Publications
- Data: NO DATA
- Reproducibility packet:
- License: CC 0 rights waiver
- Bookdown-ready
- Verified, shared, modular research communication with the Dat protocol
- Preprint: https://dat-com-chris.hashbase.io/
- Status: Publications
- Data: NO DATA
- Reproducibility packet:
- License: CC 0 rights waiver
- Bookdown-ready
- Epilogue
- Done