Merge pull request #2924 from btbest/fix-export-with-omezarr01-source #17
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| name: conda-package | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| jobs: | |
| conda-noarch-build: | |
| runs-on: ubuntu-latest | |
| outputs: | |
| version: ${{ steps.version.outputs.version }} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channel-priority: strict | |
| miniforge-version: latest | |
| conda-solver: libmamba | |
| - name: install xvfb/deps | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -yy libgl1-mesa-dev xvfb curl | |
| - name: install common conda dependencies | |
| run: conda install -n base -c conda-forge boa setuptools_scm -y | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ github.sha }}-packages | |
| - id: version | |
| shell: bash -l {0} | |
| run: | | |
| vers=$( python setup.py --version ) | |
| echo "version=${vers}" >> $GITHUB_OUTPUT | |
| - name: linux conda build test | |
| shell: bash -l {0} | |
| run: | | |
| mkdir -p ./pkgs/noarch | |
| conda mambabuild -c conda-forge conda-recipe --no-test --output-folder ./pkgs | |
| test-conda-packages: | |
| needs: [conda-noarch-build] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [macos-latest, windows-latest, ubuntu-latest] | |
| ilastik_variant: ["ilastik-core", "ilastik", "ilastik-gpu"] | |
| exclude: | |
| - os: macos-latest | |
| ilastik_variant: "ilastik-gpu" | |
| include: | |
| - ilastik_variant: "ilastik-core" | |
| build_prefix: "py_" | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| ILASTIK_PACKAGE_NAME: ${{ matrix.ilastik_variant }}-${{ needs.conda-noarch-build.outputs.version }}-${{ matrix.build_prefix }}0.tar.bz2 | |
| steps: | |
| # necessary on windows: https://github.com/actions/cache/issues/591#issuecomment-845132253 | |
| - name: "Use GNU tar instead BSD tar" | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd | |
| run: echo C:\Program Files\Git\usr\bin>>"%GITHUB_PATH%" | |
| - uses: al-cheb/[email protected] | |
| with: | |
| minimum-size: 12GB | |
| disk-root: "C:" | |
| if: | | |
| matrix.os == 'windows-latest' && | |
| matrix.ilastik_variant == 'ilastik-gpu' | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| auto-activate-base: true | |
| activate-environment: "" | |
| channel-priority: strict | |
| miniforge-version: latest | |
| conda-solver: libmamba | |
| - name: install xvfb/deps | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -yy mesa-utils libgl1-mesa-dev xvfb curl | |
| - name: install common conda dependencies | |
| run: conda install -n base -c conda-forge boa setuptools_scm -y | |
| - uses: actions/cache@v4 | |
| with: | |
| path: | | |
| pkgs/noarch | |
| pkgs/channeldata.json | |
| key: ${{ github.sha }}-packages | |
| enableCrossOsArchive: true | |
| - name: linux test | |
| if: matrix.os == 'ubuntu-latest' | |
| shell: bash -l {0} | |
| run: | | |
| xvfb-run --server-args="-screen 0 1024x768x24" conda mambabuild --test --override-channels \ | |
| -c ./pkgs -c pytorch -c nvidia -c ilastik-forge -c conda-forge \ | |
| ./pkgs/noarch/${ILASTIK_PACKAGE_NAME} | |
| - name: osx test | |
| if: matrix.os == 'macos-latest' | |
| shell: bash -l {0} | |
| run: | | |
| VOLUMINA_SHOW_3D_WIDGET=0 conda mambabuild --test --override-channels \ | |
| -c ./pkgs -c pytorch -c nvidia -c ilastik-forge -c conda-forge \ | |
| ./pkgs/noarch/${ILASTIK_PACKAGE_NAME} | |
| - name: windows test | |
| if: matrix.os == 'windows-latest' | |
| shell: cmd /C CALL {0} | |
| run: | | |
| set VOLUMINA_SHOW_3D_WIDGET=0 | |
| conda mambabuild --test --override-channels ^ | |
| -c ./pkgs -c pytorch -c nvidia -c ilastik-forge -c conda-forge ^ | |
| ./pkgs/noarch/%ILASTIK_PACKAGE_NAME% | |
| # HACK: due to a bug in conda-build need to point to | |
| # libarchive explicitly. | |
| # https://github.com/conda/conda/issues/12563#issuecomment-1494264704 | |
| env: | |
| LIBARCHIVE: C:\Miniconda\Library\bin\archive.dll |