Update binder env, db growth plot style

bioforensics · Sep 18, 2023 · 0deb427 · 0deb427
1 parent 9687e4b
commit 0deb427
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Showing 4 changed files with 22 additions and 11 deletions.
diff --git a/binder/environment.yml b/binder/environment.yml
@@ -6,4 +6,4 @@ channels:
 dependencies:
   - bash_kernel
   - curl
-  - microhapdb==0.9
+  - microhapdb==0.10
diff --git a/dbbuild/build.py b/dbbuild/build.py
@@ -41,6 +41,7 @@ def validate_paths(dbsnp_path, chain_path):
         for extension in ("vcf.gz", "vcf.gz.tbi", "rsidx"):
             path = Path(dbsnp_path) / f"dbSNP_GRCh{version}.{extension}"
             paths.append(path)
+    paths.append(Path(dbsnp_path) / "refsnp-merged.csv.gz")
     paths.append(Path(chain_path) / "hg19ToHg38.over.chain.gz")
     paths.append(Path(chain_path) / "hg38ToHg19.over.chain.gz")
     files_present = [p.is_file() for p in paths]

diff --git a/notebooks/db-growth.png b/notebooks/db-growth.png
diff --git a/notebooks/db_growth.ipynb b/notebooks/db_growth.ipynb