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Remove redundant HISTORY entries.
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roryk committed Dec 5, 2019
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5 changes: 1 addition & 4 deletions HISTORY.md
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## 1.1.9 (in progress)
- Fix for get VEP cache.
- Support Picard's new syntax for ReorderSam (REFERENCE -> SEQUENCE_DICTIONARY).
- Adds filtering of nucleosome free (NF) regions for ATAC-seq.
- Add peak calling on NF regions.
- Add uploading of full and NF BAM for ATAC-seq.
- Add documentation describing ATAC-seq outputs.
- Remove mitochondrial reads from ChIP/ATAC-seq calling.
- Add documentation describing ATAC-seq outputs.
- Add ENCODE library complexity metrics for ATAC/ChIP-seq to MultiQC report
(see https://www.encodeproject.org/data-standards/terms/#library for a description of the metrics)
- Add STAR sample-specific 2-pass. This helps assign a moderate number of reads per genes. Thanks
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