Skip to content

Commit 3a3dee4

Browse files
UmbrellaLeaf5UmbrellaLeaf5
committed
chore(data_analysis): fix doxygen and update README.md
1 parent f78807b commit 3a3dee4

File tree

10 files changed

+34
-322
lines changed

10 files changed

+34
-322
lines changed

‎.extra/doxygen/doxyfile

+5-4
Original file line numberDiff line numberDiff line change
@@ -55,7 +55,7 @@ PROJECT_NUMBER =
5555
# for a project that appears at the top of each page and should give viewer a
5656
# quick idea about the purpose of the project. Keep the description short.
5757

58-
PROJECT_BRIEF = "https://gitlab.com/UmbrellaLeaf5/drugdesign_parsing"
58+
PROJECT_BRIEF = "Module of the DrugDesign project responsible for loading and pre-processing data from ChEMBL and PubChem"
5959

6060
# With the PROJECT_LOGO tag one can specify a logo or an icon that is included
6161
# in the documentation. The maximum height of the logo should not exceed 55
@@ -180,7 +180,7 @@ INLINE_INHERITED_MEMB = YES
180180
# shortest path that makes the file name unique will be used
181181
# The default value is: YES.
182182

183-
FULL_PATH_NAMES = YES
183+
FULL_PATH_NAMES = NO
184184

185185
# The STRIP_FROM_PATH tag can be used to strip a user-defined part of the path.
186186
# Stripping is only done if one of the specified strings matches the left-hand
@@ -992,8 +992,8 @@ INPUT_FILE_ENCODING =
992992
# *.f18, *.f, *.for, *.vhd, *.vhdl, *.ucf, *.qsf and *.ice.
993993

994994
FILE_PATTERNS = *.py \
995-
*.pyw \
996995
*.md \
996+
*.json
997997

998998
# The RECURSIVE tag can be used to specify whether or not subdirectories should
999999
# be searched for input files as well.
@@ -1011,6 +1011,7 @@ RECURSIVE = YES
10111011
EXCLUDE = .venv \
10121012
.vscode \
10131013
.git \
1014+
.github \
10141015
results \
10151016
raw \
10161017
ChEMBL_notebooks \
@@ -1125,7 +1126,7 @@ FILTER_SOURCE_PATTERNS =
11251126
# (index.html). This can be useful if you have a project on for instance GitHub
11261127
# and want to reuse the introduction page also for the doxygen output.
11271128

1128-
USE_MDFILE_AS_MAINPAGE = README.md
1129+
USE_MDFILE_AS_MAINPAGE = ./README.md
11291130

11301131
# The Fortran standard specifies that for fixed formatted Fortran code all
11311132
# characters from position 72 are to be considered as comment. A common

‎.vscode/settings.json

+2
Original file line numberDiff line numberDiff line change
@@ -29,6 +29,7 @@
2929
"cython",
3030
"descs",
3131
"dmypy",
32+
"doxyfile",
3233
"dropna",
3334
"drugdesign",
3435
"druggable",
@@ -37,6 +38,7 @@
3738
"FLDF",
3839
"funcs",
3940
"gdown",
41+
"graphviz",
4042
"hepatotoxicity",
4143
"herg",
4244
"htmlcov",

‎ChEMBL_download_activities/README.md

-1
This file was deleted.

‎ChEMBL_download_cell_lines/README.md

-1
This file was deleted.

‎ChEMBL_download_compounds/README.md

-1
This file was deleted.

‎ChEMBL_download_targets/README.md

-1
This file was deleted.

‎Configurations/config.json

-308
Original file line numberDiff line numberDiff line change
@@ -55,314 +55,6 @@
5555
],
5656
[
5757
190,
58-
215
59-
],
60-
[
61-
215,
62-
230
63-
],
64-
[
65-
230,
66-
240
67-
],
68-
[
69-
240,
70-
250
71-
],
72-
[
73-
250,
74-
260
75-
],
76-
[
77-
260,
78-
267
79-
],
80-
[
81-
267,
82-
273
83-
],
84-
[
85-
273,
86-
280
87-
],
88-
[
89-
280,
90-
285
91-
],
92-
[
93-
285,
94-
290
95-
],
96-
[
97-
290,
98-
295
99-
],
100-
[
101-
295,
102-
299
103-
],
104-
[
105-
299,
106-
303
107-
],
108-
[
109-
303,
110-
307
111-
],
112-
[
113-
307,
114-
311
115-
],
116-
[
117-
311,
118-
315
119-
],
120-
[
121-
315,
122-
319
123-
],
124-
[
125-
319,
126-
323
127-
],
128-
[
129-
323,
130-
327
131-
],
132-
[
133-
327,
134-
330
135-
],
136-
[
137-
330,
138-
334
139-
],
140-
[
141-
334,
142-
337
143-
],
144-
[
145-
337,
146-
340
147-
],
148-
[
149-
340,
150-
343
151-
],
152-
[
153-
343,
154-
346
155-
],
156-
[
157-
346,
158-
349
159-
],
160-
[
161-
349,
162-
352
163-
],
164-
[
165-
352,
166-
355
167-
],
168-
[
169-
355,
170-
359
171-
],
172-
[
173-
359,
174-
363
175-
],
176-
[
177-
363,
178-
367
179-
],
180-
[
181-
367,
182-
371
183-
],
184-
[
185-
371,
186-
375
187-
],
188-
[
189-
375,
190-
379
191-
],
192-
[
193-
379,
194-
383
195-
],
196-
[
197-
383,
198-
387
199-
],
200-
[
201-
387,
202-
391
203-
],
204-
[
205-
391,
206-
395
207-
],
208-
[
209-
395,
210-
399
211-
],
212-
[
213-
399,
214-
403
215-
],
216-
[
217-
403,
218-
407
219-
],
220-
[
221-
407,
222-
411
223-
],
224-
[
225-
411,
226-
415
227-
],
228-
[
229-
415,
230-
419
231-
],
232-
[
233-
419,
234-
423
235-
],
236-
[
237-
423,
238-
427
239-
],
240-
[
241-
427,
242-
431
243-
],
244-
[
245-
431,
246-
435
247-
],
248-
[
249-
435,
250-
439
251-
],
252-
[
253-
439,
254-
443
255-
],
256-
[
257-
443,
258-
447
259-
],
260-
[
261-
447,
262-
451
263-
],
264-
[
265-
451,
266-
456
267-
],
268-
[
269-
456,
270-
461
271-
],
272-
[
273-
461,
274-
466
275-
],
276-
[
277-
466,
278-
471
279-
],
280-
[
281-
471,
282-
476
283-
],
284-
[
285-
476,
286-
481
287-
],
288-
[
289-
481,
290-
487
291-
],
292-
[
293-
487,
294-
493
295-
],
296-
[
297-
493,
298-
499
299-
],
300-
[
301-
499,
302-
506
303-
],
304-
[
305-
506,
306-
514
307-
],
308-
[
309-
514,
310-
522
311-
],
312-
[
313-
522,
314-
531
315-
],
316-
[
317-
531,
318-
541
319-
],
320-
[
321-
541,
322-
552
323-
],
324-
[
325-
552,
326-
565
327-
],
328-
[
329-
565,
330-
579
331-
],
332-
[
333-
579,
334-
596
335-
],
336-
[
337-
596,
338-
617
339-
],
340-
[
341-
617,
342-
648
343-
],
344-
[
345-
648,
346-
693
347-
],
348-
[
349-
693,
350-
758
351-
],
352-
[
353-
758,
354-
868
355-
],
356-
[
357-
868,
358-
1101
359-
],
360-
[
361-
1101,
362-
1200
363-
],
364-
[
365-
1200,
36658
1254642
36759
]
36860
]

‎PubChem_download_toxicity/README.md

-1
This file was deleted.

0 commit comments

Comments
 (0)