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vyudu committed Nov 13, 2024
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Expand Up @@ -38,3 +38,11 @@ pmap = Dict(zip(parameters(edelstein), ones(6))) # Creates dict from symbolic pa
In order to convert from a symbol dictionary to a Symbolics dictionary, one can use the `symmap_to_varmap` function from Catalyst.

### Comparisons to existing packages
A variety of packages for network analysis exist, including the following:
1. [Chemical Reaction Network Toolbox](https://zenodo.org/records/5149266) (Feinberg et al.)
2. [CoNTRoL](https://control.math.wvu.edu/) (Johnston et al.)

### Starting with Julia and Catalyst
Please see the [starting with Julia](https://docs.sciml.ai/Catalyst/stable/introduction_to_catalyst/catalyst_for_new_julia_users/) section of Catalyst.jl's documentation for tips on getting started with Julia in general.

If you have a reaction network stored in some other file format, such as `.net`, SBML, and others, please reference the [loading chemical reaction networks](https://docs.sciml.ai/Catalyst/stable/model_creation/model_file_loading_and_export/) tutorial in the Catalyst documentation. There are sections for loading `.net` and SBML files. Once the reaction network is loaded as a Catalyst `ReactionSystem`, it can be passed to the network analysis algorithms defined in this function.

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