Merge pull request #8 from RIVM-bioinformatics/release-please--branch…

…es--main--components--AminoExtract

chore(main): release 0.3.0

AminoExtract/__init__.py

@@ -1,7 +1,7 @@
 import contextlib
 
 __prog__ = "AminoExtract"
-__version__ = "0.2.1"
+__version__ = "0.3.0"
 
 # use contextlib to suppress the ImportError
 # This may occur when this file is imported in setup.py as dependencies are not yet installed

CHANGELOG.md

@@ -1,5 +1,34 @@
 # Changelog
 
+## [0.3.0](https://github.com/RIVM-bioinformatics/AminoExtract/compare/v0.2.1...v0.3.0) (2023-09-11)
+
+
+### Features
+
+* add `split_attributes` as a keyword to the `GffDataFrame` class and `read_gff()` function to either split or not split the attributes column based on user input ([51ea186](https://github.com/RIVM-bioinformatics/AminoExtract/commit/51ea1868bd389879213bb5ec762cb1b43c4bc56d))
+* expose most of the gff handling functions as direct python calls ([fe6a19f](https://github.com/RIVM-bioinformatics/AminoExtract/commit/fe6a19f22c7e250227f48c4bf2532bea870c5407))
+* expose the `read_fasta()` function for direct python calls ([b4de7a9](https://github.com/RIVM-bioinformatics/AminoExtract/commit/b4de7a9c7c05fa6fe6c5d262beb736c0cf14282d))
+
+
+### Bug Fixes
+
+* change file writing to append mode so records won't get overwritten in `writer.py` ([e5f0b0a](https://github.com/RIVM-bioinformatics/AminoExtract/commit/e5f0b0ae524f71869f7fb03173f007fb4d02b9db))
+* do not interpret default NA values from strings in pd.read_csv() ([83f821e](https://github.com/RIVM-bioinformatics/AminoExtract/commit/83f821e655507ee83d6b0103a24c87c15b695bb4))
+* lift the `_split_attribute_colums()` function out of the GffDataFrame class so it can be used without the GffDataFrame object ([6308ee1](https://github.com/RIVM-bioinformatics/AminoExtract/commit/6308ee132b95eeaa74da8e05cc506889a67d6611))
+* solve incorrect file extension when a file is presented with multiple dots ([c349ced](https://github.com/RIVM-bioinformatics/AminoExtract/commit/c349ced06fe4a3a823c4a242771e2791399a876b))
+
+
+### Dependencies
+
+* add lenient versions to conda environment file and setup.py ([6ccd2c7](https://github.com/RIVM-bioinformatics/AminoExtract/commit/6ccd2c734e872c2aefd526216e62d0286765969b))
+
+
+### Documentation
+
+* improve the docstrings of several functions in reader.py ([36ab67c](https://github.com/RIVM-bioinformatics/AminoExtract/commit/36ab67c99e4c1df900e26240f356b593664c898d))
+* update docstring for `read_gff()` function ([51ea186](https://github.com/RIVM-bioinformatics/AminoExtract/commit/51ea1868bd389879213bb5ec762cb1b43c4bc56d))
+* update readme to be more up-to-date regarding some of the newer functionalities ([e305ecb](https://github.com/RIVM-bioinformatics/AminoExtract/commit/e305ecb461bcc2cfe3b500e5f0a3623fdc1c925a))
+
 ## [0.2.1](https://github.com/RIVM-bioinformatics/AminoExtract/compare/v0.2.0...v0.2.1) (2022-12-06)