Create run_validation function for the package

* create run_validation function

* update table result

src/relation_validator/validator.py

@@ -6,18 +6,13 @@
                           split_terms, verify_relationship)
 
 
-def validate(args):
+def run_validation(data: pd.DataFrame, relationships: dict) -> pd.DataFrame:
     """
-    Validate process
+    Validation process for each relationship
     """
-    config = get_config(args.input)
-    if not config:
-        return exit
-
-    data = pd.read_csv(config["filename"])
     terms_pairs = get_pairs(data)
 
-    for _, rel in config["relationships"].items():
+    for _, rel in relationships.items():
         _, terms_pairs = verify_relationship(terms_pairs, rel)
 
     terms_s, terms_o = split_terms(terms_pairs)
@@ -26,7 +21,22 @@ def validate(args):
         data[["s", "o"]].apply(tuple, 1).isin(zip(terms_s, terms_o))
     ]
 
-    rows_nv.to_csv(args.output, index=False)
+    return rows_nv
+
+
+def validate(args):
+    """
+    Validate process
+    """
+    config = get_config(args.input)
+    if not config:
+        return exit
+
+    data = pd.read_csv(config["filename"])
+
+    report = run_validation(data, config["relationships"])
+
+    report.to_csv(args.output, index=False)
 
 
 def ontologies_version(args):

tests/test-results.csv

@@ -2226,7 +2226,6 @@ http://purl.org/ccf/latest/ccf.owl#VHFUrinaryBladder,http://purl.org/ccf/latest/
 http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_body_of_uterus,UBERON:0009853,UBERON:0000002,body of uterus,uterine cervix
 http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_internal_cervical_os,UBERON:0013759,UBERON:0000002,internal cervical os,uterine cervix
 http://purl.org/ccf/latest/ccf.owl#VHFUterus,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_external_cervical_os,UBERON:0013760,UBERON:0000002,external cervical os,uterine cervix
-http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0004027,Placenta,chorionic plate
 http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,UBERON:0001987,UBERON:0000305,Placenta,amnion
 http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_chorionic_plate,UBERON:0004027,UBERON:0000305,chorionic plate,amnion
 http://purl.org/ccf/latest/ccf.owl#VHFPlacenta,http://purl.org/ccf/latest/ccf.owl#VHFemaleOrgans_VH_F_amnion,UBERON:0000305,UBERON:0004027,amnion,chorionic plate