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MGnify pipeline v5.0 uses CWL conditionals
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@KateSakharova KateSakharova released this 20 Jul 09:49
· 70 commits to master since this release
v5.0.2
1e8e721
  • conditionals unite before-qc and after-qc steps
  • new chunker for DNA sequences
  • introduced suppress folder for ITS annotations
  • chunking Trimmomatic step for large FastQ files
  • conditionals for SeqPrep (use for paired-end reads, skip for single-end reads)
  • chunking antismash step
  • hmmscan changed to hmmsearch
  • all paths for dbs in yml changed from File/Directory types to string
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