v1.2.0

What's Changed

• Added functionality to upload private data with Webin credentials.
• Streamline ENA query exceptions

Full Changelog : v1.1.0...v1.2.0

v1.1.0

What's Changed

• Use as a Python library by @SandyRogers in #5

The assembly_uploader steps can be integrated into other Python scripts:

from assembly_uploader.study_xmls import StudyXMLGenerator, METAGENOME
from assembly_uploader.submit_study import submit_study
from assembly_uploader.assembly_manifest import AssemblyManifestGenerator

StudyXMLGenerator(
    study="SRP272267",
    center_name="EMG",
    library=METAGENOME,
    tpa=True,
    output_dir=Path("my-study"),
).write()

new_study_accession = submit_study("SRP272267", is_test=True, directory=Path("my-study"))

AssemblyManifestGenerator(
    study="SRP272267",
    assembly_study=new_study_accession,
    assemblies_csv=Path("/path/to/my/assemblies.csv"),
    output_dir=Path("my-study"),
).write()

New Contributors

• @SandyRogers made their first contribution in #5

Full Changelog: 1.0.3...v1.1.0

1.0.3

Fix to TPA flag

v1.0.1

Full Changelog: v1.0.0...v1.0.1

First RC release

This is the first stable release of the assembly uploader. Great work by @Ge94 @Vkale1 @KateSakharova

Full Changelog: https://github.com/EBI-Metagenomics/assembly_uploader/commits/v1.0.0