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Yohei iter module#251

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yohei-sato-psi wants to merge 236 commits intomainDelNov/T-Flows:mainfrom yohei_iter_moduleDelNov/T-Flows:yohei_iter_moduleCopy head branch name to clipboard

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Commits on Feb 19, 2023

• Fixed (bnd.) cell ranges and extend them to faces.

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• Renamed regions to ranges in Generator.

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Commits on Feb 20, 2023

• Shared/Boundary_Mod.f90 -> Shared/Region_Mod.f90

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• Continuation of previous commit:

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Commits on Feb 21, 2023

• Added a better test for shadows with assertion.

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Commits on Feb 22, 2023

• Uses MPI_IN_PLACE to avoid local memory allocation

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• Renamed n_regions to n_bnd_regions

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• Uses face and cell ranges and macros for browsing

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• Added include statement for macros

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• IMPORTANT: Essence of the fix to cell ranges!

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• Unfortunate, but every time cell numbering changes

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• Added macro "Cells_In_Region"

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• Uses macro Boundary_Regions()

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• Uses macros Cells_In_Region and Boundary_Regions

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• VERY IMPORTANT FIX in calculation of wall distance

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• Uses macros for browsing.

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• User_Mod can now include macros.

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Commits on Feb 24, 2023

• GOOD: Got rid of the ghost "-1" marks.

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• Got rid of all of them density contraptions here

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• Started using browsing macros in Vof_Mod.

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Commits on Feb 25, 2023

• IMPORTANT FIX to bounary cell ranges.

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• VERY GOOD: Assert adapted for parallel runs

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• Former HUGE_INT became EULER, and HUGE_INT is 2^30

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Commits on Feb 26, 2023

• Domain_Mod became a class.

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• Added intention to input arguments.

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• Ranges are allocated centrally, from one function

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• IMPORTANT: Fixed the bug with browsing cells.

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Commits on Feb 27, 2023

• Corrected an error in the script for Generate

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• Uses macro to integrate force.

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• Corrected a little missalignement in output

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• Renamed two functions in Grid_Mod

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• IMPORTANT: Fixed allocation issue with Dual meshes

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Commits on Feb 28, 2023

• Further use of browsing macros.

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• Fixed Convert for cases of purely tetrahedra grid

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Commits on Mar 1, 2023

• Fixed VOF initialization from STL

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Commits on Mar 2, 2023

• Improved conversion from GMSH in terms of speed

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• Removed unused declaration and changed a comment

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• Further improvements of speed of conversion

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Commits on Mar 3, 2023

• Uses regions for Reynods stress models

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• Uses regions for one, two and four equation models

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• Merge branch 'main' of https://github.com/DelNov/T-Flows into bojan_fixed_cell_ranges

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Commits on Mar 6, 2023

• Fixed the Spalart-Allmaras model in convective

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Commits on Mar 7, 2023

• Makes a distinguishment for Bnd_Cond_Name function

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• Avoids zillion messages when opening control file

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• Calculate_Fluxes.f90 -> Calculate_Bulk_Fluxes.f90

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• Following commit:

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Commits on Mar 8, 2023

• Updates for OPENMP options in makefiles

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Commits on Mar 9, 2023

• Added Save_Vtk_Face to Grid_Mod

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• Added Save_Vtk_Face to Grid_Mod

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• Changed format of the written numbers.

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Commits on Mar 10, 2023

• Added three new asserts.

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• Added a check for boundary cells.

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• Check if there are boundary conditions are defined

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Commits on Mar 11, 2023

• Transfered improved gradients for pressure to here

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Commits on Mar 12, 2023

• Made output 2 characters wider.

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• Made Tokenizer's only member procedure pure.

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• New member function "First_Upper" in String_Dom

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• Default option for OPENMP in Process is "no"

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• Updated makefile dependencies.

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• Forgotten file from commit:

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• Fine adjustments to position of profiler.

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• Computes all three gradient componetns in one loop

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• IMPORTANT: OpenMP for gradient calculation

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• Important: OpenMP for linear solvers.

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• Merge branch 'bojan_omp_grad'

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• Merge branch 'main' into bojan_fixed_cell_ranges

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Commits on Mar 13, 2023

• Preparations for threading for OpenMP and alike

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• Merge branch 'main' from origin

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• Fixed output @ default user function for particles

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• As a constant, Program_Name should be upper case

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• Embryo of implementation of threads for OpenMP

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• Saves threads and cell inertia (long forgotten)

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• Added a script for Divide

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Commits on Mar 14, 2023

• Introduced Grid % Determine_Threads

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• IMPORTANT: Renamed option OPENMP to OMP

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• Gave member function a more meaningful name:

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• Gave another member function more meaningful name:

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• Added a missing "!$omp end parallel do"

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• Added an additional check on how faces are sorted

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Commits on Mar 15, 2023

• New macro: Cells_In_Buffers()

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• Call to Determine_Threads is better of in Main_Pro

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• RISKY: Removed a condition when forming copy bcs

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• cell_glo and node_glo are now arrays.

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• Modernized and cleand the coding a little bit.

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• Two modifications to the Grid_Mod:

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• Limits division in threads only to inside cells.

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• Added a self-check to Form_Cells_Comm

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• NEAT: Uses macros for browsing

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• Uses simpler test for self-checking

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• Got rid of OPENMP options (it is obsolete by now)

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Commits on Mar 16, 2023

• Insignificant: Corrected a case for variable.

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• Important: Introduced module for OpenMP: Vect_Mod

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• Simplified version of defining threads.

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• Good: introduced an optional integer array to plot

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• Introduced face_thread to Vect_Type

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• First version which determines face threads.

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• Member procedures in separate files for Vect_Mod

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• Added a possibility to print used time in seconds.

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• Added a case to test different OpenMP loops.

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Commits on Mar 17, 2023

• Removed compilation tests from here.

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• IMPORTANT: Spud up native linear solvers by 14%

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• Renamed a local variable to be like in Prec_Solve

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• Juiced a wee bit more performance here.

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Commits on Mar 18, 2023

• Improved declarations a bit.

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• Juiced a fraction of percentage point in OMP speed

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• Better alignment for reporting in seconds.

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• Expanded makefiles with options for profiling

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Commits on Mar 19, 2023

• Uses Message_Mod for error messages.

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• Uses Message_Mod for error messages.

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• Some crap

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Commits on Mar 20, 2023

• Deleted unused local variables.

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• Uses Message_Mod for error messages.

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• A way to avoid too many warnings while compiling

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Commits on Mar 21, 2023

• Makes use of some local variables.

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• Corrected an error in makefile_explicit_depen...

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• This is an amendment to previous check in, reading

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• FINALLY: imposed separate options for User_Mod

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• PROGRAM_NAME is now parameter in Const_Mod.

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• Profiler_Mod reads control file for PROFILER_INFO

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• Profiler_Mod reads control file for PROFILER_INFO

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• Didn't want to push unless I make a pull :-S

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Commits on Mar 22, 2023

• Spreading browsing macros to Turb_Mod.

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• Updated comment in a makefile, insignificant

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• Added a little comment, nothing really.

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• Fixed intentions.

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• Renamed all member functions in Results_Mod.

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• Backup_Type became a class, a full-fledged one

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• Some update tests from the workstation

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Commits on Mar 23, 2023

• Uses browsing macro.

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• Calls Message module for error.

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• Track front instead of surface.

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• Calculate distance from the wall in Convert

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• Changed some local variable names in Backup_Mod

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• Added an STL file

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• Two changes in test_build.sh

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• Merge branch 'bojan_updated_tests'

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Commits on Mar 24, 2023

• Fixed compilation for Nvidia's Fortran.

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• No idea how this file ended up here. Gone now!

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• IMPORTANT: this_proc and n_proc no longer global!

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• Modifications necessary for Nvidia Fortran

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• OK, this is kind of smart.

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• Insignificant little change in the document.

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• Added

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Commits on Mar 25, 2023

• Found a proper way to deal with \ for Nvidia

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• For compilation with Nvidia Fortran

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• Prescribed intention in many procedures

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• Added Nvidia compiler

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• Introduced object Global for global communication

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• Fixed PETSc compilation

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• Added Nvidia compiler - again. Go figure.

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• Merge branch 'bojan_more_robust_communicator'

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• Updated T-Flows syntax file.

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• Little updates to T-Flows syntax file

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Commits on Mar 26, 2023

• Adjusted line widths here and there; not important

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• Updated Fortran syntax file a little bit.

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• Ditched some unused files.

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• Little updates.

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• Small cosmetic changes.

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Commits on Mar 27, 2023

• Little updates

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• Added some files for the laminar heat exchanger

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• Removed very old solvers.

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• Merge branch 'bojan_more_robust_communicator'

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• One more little update to syntax highlighting file

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• Fixed PETSc compilation - again.

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• Added a missing keyword. How did it go missing?

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• Added a couple of STL files. They are rather small

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• Correction to a number of control files.

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• Merge branch 'bojan_more_robust_communicator'

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Commits on Mar 28, 2023

• Inserted a few comments

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• IMPORTANT: Fixed the keyword for phase capacities!

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• Changed alignement and removed obsolete entries

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• IMPORTANT: Removed an extra blank like ...

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• Cosmetic changes in control files

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• Introduced vim syntax files for control

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• IMPORTANT: Fixed the profiler!!!

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• Set profiler info to be in seconds, just for kicks

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• Shortened the syntax for Profiler.

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• Introduced macros for RSM

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• Had to go back with User_Mod savings

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• Merge branch 'bojan_more_robust_communicator'

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• Updated User_Mod_Save_Results with macros.

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Commits on Mar 29, 2023

• This is more a warning than an error

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Commits on Mar 30, 2023

• Convenient: creates .pvtu file for Front

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• Got rid of some redundant declarations for indents

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Commits on Mar 31, 2023

• Added a new member procedure: Volume_Average!

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Commits on Apr 1, 2023

• Fixed: k_epsilon was missing in the list of models

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• Little reconstruction of the Info_Mod.

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• Further reconstruction of Info_Mod.

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• Little updates

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• Interesting - Info_Mod wasn't working with intent

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• Spread macros further in Turb_Mod.

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• Juiced couple of percent in performance ...

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• Calls profiling functions

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Commits on Apr 2, 2023

• Saves and checks the version of the files

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• Modernizing Control_Mod; step 1

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• Modernizing Control_Mod; step 2

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• Modernizing Control_Mod; step 3

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• Modernizing Control_Mod; step 4

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• Modernizing Control_Mod; step 4

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• Merge branch 'bojan_more_robust_communicator'

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• Added a few missing items to syntax

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• Added three former global Comm functions to member

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• Updates in Comm_Mod and (a bit less) Control_Mod

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Commits on Apr 3, 2023

• Improved internal structure of Control_Mod a bit

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• Reduced the size of Tokenizer to avoid warnings

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Commits on Apr 5, 2023

• Fixed line indentation - insignificant.

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• Last modification proved to be a pain in the neck

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• An error has be reduced to warning.

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• Resolved compiler warning for Tokenizer again

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• IMPORTANT: changed the orientation of cells' faces

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• Gives a proper name in Save_Debug_Front_Vtu.

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Commits on Apr 6, 2023

• Some updates in vim control file

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Commits on Apr 15, 2023

• A small update!

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Commits on Apr 16, 2023

• Introduced Time_Type class and its object Time

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• Small update in Fortran syntax

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Commits on Apr 19, 2023

• Implicit none was missing everywhere in Time_Mod!

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• IMPORTANT: Introduced Iter_Mod

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Commits on Apr 20, 2023

• Nothing really, updated a comment.

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• Updates in syntax for control and Fortran sources

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• IMPORTANT FIX!

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• IMPORTANT: Tidied up the controls for solvers!

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• A commented block to check if matrix is symmetric

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• Expanded comments in Petsc_Mod a little bit.

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• Updated links to PETSc man pages.

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• Tried to fix the test for Heat_Exchanger/2_Domains

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Commits on Apr 22, 2023

• Fixed the check for scalars

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Commits on Apr 26, 2023

• fix typo: FORTRAN

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Commits on Apr 27, 2023

• bug fixed: DataArray -> PDataArray

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• bug fixed: format

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• avoid divided-by-zero

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• Calculate Courant number after UDF

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• implement wall adhesion force (contact angle model) correctly

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• calculate Courant number after UDF

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• include physical time into vtu files

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Commits on Apr 29, 2023

• allow initial condition for vof as real in addition to stl-file

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Commits on May 2, 2023

• introduce keyword "SAVE_RESULTS_UNIT" in control. Units in vtu-file, e.g. [m/s], cause trouble in VisIt (visualization software).

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