CI #965 bypass ruff workflow due to bug #159
Workflow file for this run
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| name: Unit Tests & Code Coverage | ||
| on: | ||
| # Triggers the workflow on push or pull request events but only for the main branch | ||
| push: | ||
| branches: | ||
| - main | ||
| pull_request: | ||
| branches: | ||
| - main | ||
| workflow_dispatch: # allow manual triggering | ||
| defaults: | ||
| run: | ||
| shell: bash -l {0} | ||
| jobs: | ||
| lint: | ||
| name: Code style | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.11" | ||
| - name: Install package | ||
| run: | | ||
| set -vxeuo pipefail | ||
| python -m pip install --upgrade pip | ||
| # - name: Run ruff | ||
| # uses: davidslusser/[email protected] | ||
| # with: | ||
| # python_version: "3.11" | ||
| # https://github.com/davidslusser/actions_python_ruff/issues/2 | ||
| - run: pip install ruff | ||
| - run: | | ||
| ruff check . | ||
| install-catalogs: | ||
| name: Install & cache databroker catalogs | ||
| runs-on: ubuntu-latest | ||
| needs: lint | ||
| strategy: | ||
| matrix: | ||
| python-version: | ||
| - "3.11" | ||
| max-parallel: 5 | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - uses: actions/setup-python@v5 | ||
| with: | ||
| python-version: "3.11" | ||
| - name: Create Python ${{ matrix.python-version }} environment | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| cache-environment: true | ||
| cache-environment-key: env-key-${{ matrix.python-version }} | ||
| condarc: | | ||
| channel-priority: flexible | ||
| environment-file: environment.yml | ||
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | ||
| - name: Unpack | ||
| run: | | ||
| set -vxeuo pipefail | ||
| which databroker-pack | ||
| which databroker-unpack | ||
| cd resources | ||
| bash ./unpack.sh | ||
| cd .. | ||
| - name: Directory Listings | ||
| run: | | ||
| set -vxeuo pipefail | ||
| ls -lAFghR ~/.local/ | ||
| ls -lAFghR /tmp/*_test/ | ||
| - name: Prepare archival content | ||
| run: | | ||
| set -vxeuo pipefail | ||
| mkdir -p ~/databroker_catalogs/ | ||
| mv ~/.local ~/databroker_catalogs/ | ||
| mv /tmp/*_test ~/databroker_catalogs/ | ||
| - name: Archive catalog artifacts | ||
| uses: actions/upload-artifact@v4 | ||
| with: | ||
| name: databroker_catalogs | ||
| path: ~/databroker_catalogs | ||
| test-matrix: | ||
| name: Python ${{ matrix.python-version }} | ||
| runs-on: ubuntu-latest | ||
| needs: install-catalogs | ||
| strategy: | ||
| matrix: | ||
| python-version: | ||
| - "3.8" | ||
| - "3.9" | ||
| - "3.10" | ||
| - "3.11" | ||
| max-parallel: 5 | ||
| steps: | ||
| - uses: actions/checkout@v4 | ||
| - name: Create Python ${{ matrix.python-version }} environment | ||
| uses: mamba-org/setup-micromamba@v1 | ||
| with: | ||
| cache-environment: true | ||
| cache-environment-key: env-key-${{ matrix.python-version }} | ||
| condarc: | | ||
| channel-priority: flexible | ||
| environment-file: environment.yml | ||
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | ||
| create-args: >- | ||
| coveralls | ||
| pytest | ||
| pytest-cov | ||
| python=${{ matrix.python-version }} | ||
| setuptools-scm | ||
| - name: Initial diagnostics | ||
| run: | | ||
| set -vxeuo pipefail | ||
| micromamba info | ||
| micromamba list | ||
| conda config --show-sources | ||
| conda config --show | ||
| micromamba env list | ||
| printenv | sort | ||
| - name: Directories before Docker | ||
| run: ls -lAFghrt ~/ | ||
| - name: Start EPICS IOCs in Docker | ||
| run: | | ||
| set -vxeuo pipefail | ||
| bash ./.github/scripts/iocmgr.sh start GP gp | ||
| bash ./.github/scripts/iocmgr.sh start ADSIM ad | ||
| docker ps -a | ||
| ls -lAFgh /tmp/docker_ioc/iocad/ | ||
| ls -lAFgh /tmp/docker_ioc/iocgp/ | ||
| - name: Directories after Docker | ||
| run: ls -lAFghrt ~/ | ||
| - name: Confirm EPICS IOC is available via caget | ||
| shell: bash -l {0} | ||
| run: | | ||
| set -vxeuo pipefail | ||
| docker exec iocgp grep float1 /home/iocgp/dbl-all.txt | ||
| docker exec iocgp /opt/base/bin/linux-x86_64/caget gp:UPTIME gp:gp:float1 | ||
| docker exec iocad /opt/base/bin/linux-x86_64/caget ad:cam1:Acquire_RBV | ||
| which caget | ||
| caget gp:UPTIME | ||
| caget gp:gp:float1 | ||
| caget ad:cam1:Acquire_RBV | ||
| - name: Confirm EPICS IOC is available via PyEpics | ||
| shell: bash -l {0} | ||
| run: | | ||
| python -c "import epics; print(epics.caget('gp:UPTIME'))" | ||
| - name: Confirm EPICS IOC is available via ophyd | ||
| shell: bash -l {0} | ||
| run: | | ||
| CMD="import ophyd" | ||
| CMD+="; up = ophyd.EpicsSignalRO('gp:UPTIME', name='up')" | ||
| CMD+="; pv = ophyd.EpicsSignalRO('gp:gp:float1', name='pv')" | ||
| CMD+="; up.wait_for_connection()" | ||
| CMD+="; print(up.get(), pv.get())" | ||
| python -c "${CMD}" | ||
| - name: Download catalog artifacts | ||
| uses: actions/download-artifact@v4 | ||
| with: | ||
| name: databroker_catalogs | ||
| path: ~/databroker_catalogs | ||
| - name: Restore archival content | ||
| run: | | ||
| set -vxeuo pipefail | ||
| mkdir -p ~/.local/share/intake | ||
| mv ~/databroker_catalogs/.local/share/intake/* ~/.local/share/intake | ||
| mv ~/databroker_catalogs/*_test /tmp/ | ||
| - name: Diagnostics | ||
| shell: bash -l {0} | ||
| run: | | ||
| set -vxeuo pipefail | ||
| df -HT | ||
| micromamba list | ||
| - name: Test catalog length, expect 53 | ||
| shell: bash -l {0} | ||
| run: python -c "import databroker; print(len(databroker.catalog['apstools_test']))" | ||
| - name: Run tests with pytest & coverage | ||
| shell: bash -l {0} | ||
| run: | | ||
| set -vxeuo pipefail | ||
| coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst . | ||
| coverage combine | ||
| coverage report --precision 3 | ||
| - name: Upload coverage data to coveralls.io | ||
| shell: bash -l {0} | ||
| run: | | ||
| set -vxeuo pipefail | ||
| micromamba list coveralls | ||
| which coveralls | ||
| coveralls debug | ||
| coveralls --service=github | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | ||
| COVERALLS_PARALLEL: true | ||
| # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | ||
| coveralls: | ||
| name: Report unit test coverage to coveralls | ||
| needs: test-matrix | ||
| runs-on: ubuntu-latest | ||
| container: python:3-slim | ||
| steps: | ||
| - name: Gather coverage and report to Coveralls | ||
| run: | | ||
| set -vxeuo pipefail | ||
| echo "Finally!" | ||
| pip3 install --upgrade coveralls | ||
| # debug mode: output prepared json and reported files list to stdout | ||
| # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | ||
| coveralls debug | ||
| coveralls --service=github --finish | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
