I'm a research software engineer, genome biologist, and educator who helps researchers of all levels improve their computer science and data science skills.
- WEHI-Education/Workshop-intermediate-slurm - Intermedate Slurm Workshop source code using the Software Carpentry Workbench style. (today)
- WEHI-Education/Workshop-IntroToHPC-Slurm - RCP Training introducing HPC concepts and SLURM (today)
- Adamtaranto/TE-splitter - Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons. (4 weeks ago)
- tanghaibao/jcvi - Python library to facilitate genome assembly, annotation, and comparative genomics (1 month ago)
- oxli-bio/oxli - k-mers and the like (1 month ago)
- Adamtaranto/learn-hatch (0.1.0, 2 months ago) - Learning how to do python packaging with Hatch.
- Adamtaranto/teloclip (0.1.0, 2 months ago) - A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
- Adamtaranto/blast-besties (1.2.0, 3 months ago) - Rapid discovery of reciprocal best blast pairs.
- Adamtaranto/TE-insertion-scanner (0.2.1, 3 months ago) - Scan whole genome alignments for signatures of transposon insertion.
- Adamtaranto/mimeo (1.1.2, 3 months ago) - Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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