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nucdiff error #24

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rthapa1 opened this issue Feb 23, 2021 · 3 comments
Open

nucdiff error #24

rthapa1 opened this issue Feb 23, 2021 · 3 comments

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@rthapa1
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rthapa1 commented Feb 23, 2021 •
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Hi, I am running NucDiff but got an error. Could you please check this? Thanks

File "/Users/Downloads/nucdiff/NucDiff-master/nucdiff/nucdiff.py", line 17, in
from .find_errors import FIND_ERRORS_ASSEMBLY
ModuleNotFoundError: No module named 'main.find_errors'; 'main' is not a package
@kseniakh
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Hi!

Can you write the command that you try to run?

@rthapa1
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rthapa1 commented Feb 23, 2021

python /Users/Downloads/nucdiff/NucDiff-master/nucdiff/nucdiff.py WA1 /Users/Downloads/nucdiff/GCF_000091565.fasta /Users/Downloads/nucdiff/barcode2_EaWA1.fasta

@kseniakh
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Please try these commands:
cd /Users/Downloads/nucdiff/NucDiff-master/
python -m nucdiff.nucdiff WA1 /Users/Downloads/nucdiff/GCF_000091565.fasta /Users/Downloads/nucdiff/barcode2_EaWA1.fasta

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@kseniakh @rthapa1