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Oliver LaslettOliver Laslett
Oliver Laslett
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Oliver Laslett
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‎.ipynb_checkpoints/finmag_nb_test-checkpoint.ipynb

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{
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"metadata": {
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"name": "",
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"signature": "sha256:29457ad5a74b2864b3e41cdc5a822314b0ddc3b330aa4761b0411fb6effe58d5"
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"signature": "sha256:7b3faaa3a17f11cec3fa1ef6ebbc43eec80777909bd16b15ae90d195a22d46fa"
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},
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"nbformat": 3,
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"nbformat_minor": 0,
@@ -30,63 +30,63 @@
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:06] INFO: Finmag logging output will be appended to file: '/home/david/.finmag/global.log'\n"
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"[2014-11-28 14:01:34] INFO: Finmag logging output will be appended to file: '/home/david/.finmag/global.log'\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:06] DEBUG: Building modules in 'native'...\n"
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"[2014-11-28 14:01:34] DEBUG: Building modules in 'native'...\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: FinMag 5607:8e36b14270ab630eef92ba6690b5892e077a6011\n"
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"[2014-11-28 14:01:37] DEBUG: FinMag 5637:748ea2d1140ca13bf4c9e7e9b4635fd5e81f41f2\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: Dolfin 1.4.0 Matplotlib 1.4.1 \n"
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"[2014-11-28 14:01:37] DEBUG: Dolfin 1.4.0 Matplotlib lazily loaded \n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: Numpy 1.8.2 Scipy 0.14.0 \n"
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"[2014-11-28 14:01:37] DEBUG: Numpy 1.8.2 Scipy 0.14.0 \n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: IPython 2.3.0 Python 2.7.6 \n"
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"[2014-11-28 14:01:37] DEBUG: IPython 2.3.0 Python 2.7.6 \n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: Paraview 4.0.1-1ubuntu1 Sundials 2.5.0 \n"
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"[2014-11-28 14:01:37] DEBUG: Paraview 4.0.1-1ubuntu1 Sundials 2.5.0 \n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: Boost-Python <unknown> Linux Ubuntu 14.04.1 LTS \n"
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"[2014-11-28 14:01:37] DEBUG: Boost-Python <unknown> Linux Ubuntu 14.04.1 LTS \n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:07] DEBUG: Registering debug signal handler. Press Ctrl-Z at any time to stop execution and jump into the debugger.\n"
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"[2014-11-28 14:01:37] DEBUG: Registering debug signal handler. Press Ctrl-Z at any time to stop execution and jump into the debugger.\n"
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]
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},
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{
@@ -112,98 +112,105 @@
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] INFO: Finmag logging output will be written to file: '/home/david/hg/ipython-nb-testing/barmini.log' (any old content will be overwritten).\n"
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"[2014-11-28 13:36:24] INFO: Finmag logging output will be written to file: '/home/david/hg/ipython-nb-testing/barmini.log' (any old content will be overwritten).\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating DataWriter for file 'barmini.ndt'\n"
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"[2014-11-28 13:36:24] DEBUG: Creating DataWriter for file 'barmini.ndt'\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] INFO: Creating Sim object 'barmini' (rank=0/1).\n"
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"[2014-11-28 13:36:24] INFO: Creating Sim object 'barmini' (rank=0/1).\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] INFO: <Mesh of topological dimension 3 (tetrahedra) with 45 vertices and 96 cells, ordered>\n"
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"[2014-11-28 13:36:24] INFO: <Mesh of topological dimension 3 (tetrahedra) with 45 vertices and 96 cells, ordered>\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating LLG object.\n"
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"[2014-11-28 13:36:24] DEBUG: Creating LLG object.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating Exchange object with method box-matrix-petsc, in Jacobian.\n"
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"[2014-11-28 13:36:24] WARNING: Integrator reinit was requested, but no integrator is present in the simulation!\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Adding interaction Exchange to simulation.\n"
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"[2014-11-28 13:36:24] DEBUG: Creating Exchange object with method box-matrix-petsc, in Jacobian.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating Demag object with solver 'FK'.\n"
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"[2014-11-28 13:36:24] DEBUG: Adding interaction Exchange to simulation.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Demag parameters now: {'phi_1': {'absolute_tolerance': 1e-06, 'relative_tolerance': 1e-06, 'maximum_iterations': 10000}, 'phi_2': {'absolute_tolerance': 1e-06, 'relative_tolerance': 1e-06, 'maximum_iterations': 10000}, 'phi_2_solver': 'default', 'phi_2_preconditioner': 'default', 'phi_1_preconditioner': 'default', 'phi_1_solver': 'default'}\n"
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"[2014-11-28 13:36:24] DEBUG: Creating Demag object with solver 'FK'.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Adding interaction Demag to simulation.\n"
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"[2014-11-28 13:36:24] DEBUG: Demag parameters now: {'phi_1': {'absolute_tolerance': 1e-06, 'relative_tolerance': 1e-06, 'maximum_iterations': 10000}, 'phi_2': {'absolute_tolerance': 1e-06, 'relative_tolerance': 1e-06, 'maximum_iterations': 10000}, 'phi_2_solver': 'default', 'phi_2_preconditioner': 'default', 'phi_1_preconditioner': 'default', 'phi_1_solver': 'default'}\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Using Krylov solver for demag.\n"
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"[2014-11-28 13:36:24] DEBUG: Adding interaction Demag to simulation.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating macro-geometry with demag 1 x 1 tiles (dxdy: 3.0 x 3.0)\n"
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"[2014-11-28 13:36:24] DEBUG: Using Krylov solver for demag.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Boundary element matrix uses 0.01 MB of memory.\n"
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"[2014-11-28 13:36:24] DEBUG: Creating macro-geometry with demag 1 x 1 tiles (dxdy: 3.0 x 3.0)\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Successfully created simulation 'barmini'\n"
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"[2014-11-28 13:36:24] DEBUG: Boundary element matrix uses 0.01 MB of memory.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-28 13:36:24] DEBUG: Successfully created simulation 'barmini'\n"
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]
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}
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],
@@ -222,49 +229,49 @@
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] INFO: Simulation will run until t = 1e-10 s.\n"
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"[2014-11-28 13:36:24] INFO: Simulation will run until t = 1e-10 s.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] INFO: Create integrator sundials with kwargs={}\n"
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"[2014-11-28 13:36:24] INFO: Create integrator sundials with kwargs={}\n"
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]
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},
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{
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"output_type": "stream",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Creating integrator with backend sundials.\n"
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"[2014-11-28 13:36:24] DEBUG: Creating integrator with backend sundials.\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Updating get method for steps in TableWriter(name=barmini.ndt)\n"
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"[2014-11-28 13:36:24] DEBUG: Updating get method for steps in TableWriter(name=barmini.ndt)\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Updating get method for last_step_dt in TableWriter(name=barmini.ndt)\n"
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"[2014-11-28 13:36:24] DEBUG: Updating get method for last_step_dt in TableWriter(name=barmini.ndt)\n"
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]
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},
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{
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"output_type": "stream",
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:11] DEBUG: Updating get method for dmdt in TableWriter(name=barmini.ndt)\n"
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"[2014-11-28 13:36:24] DEBUG: Updating get method for dmdt in TableWriter(name=barmini.ndt)\n"
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]
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},
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{
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"stream": "stderr",
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"text": [
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"[2014-11-07 13:11:27] INFO: Simulation has reached time t = 1e-10 s.\n"
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"[2014-11-28 13:36:26] INFO: Simulation has reached time t = 1e-10 s.\n"
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]
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}
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],
@@ -337,6 +344,31 @@
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],
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"prompt_number": 6
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},
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{
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"cell_type": "code",
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"collapsed": false,
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"input": [
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"# This is meant to fail when the number of lines\n",
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"# mismatch\n",
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"for i in range(np.random.randint(1, 8)):\n",
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" print i"
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],
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"language": "python",
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"metadata": {},
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"outputs": [
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{
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"output_type": "stream",
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"stream": "stdout",
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"text": [
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"0\n",
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"1\n",
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"2\n",
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"3\n"
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]
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}
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],
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"prompt_number": 8
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},
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{
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"cell_type": "code",
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"collapsed": false,

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