NAMESPACE

export(
	"call.cnas.with.matched.normals",
	"call.cnas.with.pooled.normals",
	"collapse.genes",
	"evaluate.replicates",
	"get.ari",
	"invariant.probe.norm",
	"load.phenodata",
	"make.cna.densities.plots",
	"make.cna.heatmap",
	"make.counts.heatmap",
	"make.invariant.probe.plot",
	"make.positive.control.plot",
	"make.sample.correlations.heatmap",
	"normalize.global",
	"normalize.per.chip",
	"positive.control.qc",
	"restriction.fragmentation.qc",
	"visualize.results"
	);
import(
	"testthat",
	"lattice",
	"BoutrosLab.plotting.general", 
	"NanoStringNorm",
	"futile.logger",
	"mclust",
	"reshape2",
	"gdata",
	"vsn",
	"vegan"
	);
importFrom(
	"vegan",
	"vegdist"
	);
importFrom(
	"grDevices",
	"dev.off",
	"pdf",
	"colours"
	);
importFrom(
	"stats",
	"aggregate",
	"as.dist",
	"cor",
	"cutree",
	"density",
	"hclust",
	"median",
	"sd",
	"na.omit"
	);
importFrom(
	"utils",
	"head",
	"tail",
	"read.csv",
	"read.delim"
	);
importFrom(
	"reshape2",
	"melt"
	);