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closes #27 - fix F2 detection in methods.config and updated CHANGELOG.md and nextflow.config (#32)
Co-authored-by: Mootor <mmootor@ip-0A125235.rhxrlfvjyzbupc03cc22jkch3c.xx.internal.cloudapp.net>
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CHANGELOG.md

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@@ -8,6 +8,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
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---
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## [Unreleased]
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### Changed
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- Fix F2 detection in Line 111 of methods.config
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@@ -34,4 +36,4 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
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- Add option to specify `map_qual`, `min_clique_size`, and `mad_cutoff` Delly filters to reduce the runtime.
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- Use BCFtools to automatically generate the samples.tsv that is needed by the sSV filtering (see https://github.com/dellytools/delly).
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pipeline/config/methods.config

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@@ -108,7 +108,7 @@ methods {
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}
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else {
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// Check memory for F series node
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if (node_memory_GB >= (node_cpus * 2 * 0.9) && node_memory_GB <= (node_cpus * 2)) {
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if (node_memory_GB >= (node_cpus * 2 * 0.9 - 1) && node_memory_GB <= (node_cpus * 2)) {
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includeConfig "${projectDir}/config/F${node_cpus}.config"
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}
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else {

pipeline/nextflow.config

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@@ -5,7 +5,7 @@ manifest {
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name = "call-sSV"
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mainScript = "call-sSV.nf"
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nextflowVersion = ">=20.07.1"
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author = "Yu Pan, Ghouse Mohammed"
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author = "Yu Pan, Ghouse Mohammed, Mohammed Faizal Eeman Mootor"
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homePage = "https://github.com/uclahs-cds/pipeline-call-sSV"
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description = "A pipeline to call somatic SVs utilizing Delly"
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version = "2.0.0"

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