F2.config

// Other processes will only run one at a time, so
// we don't need to control their resources.
// The configuration below forces processes to run one at a time by needing
// the total memory available on a lowmem node.

process {
    withName: run_validate_PipeVal {
        cpus = 1
        memory = 1500.MB
    }
    if (params.input_type == 'bam') {
        withName: call_sSNV_SomaticSniper {
            cpus = 1
            memory = 1500.MB
        }
        withName: convert_BAM2Pileup_SAMtools {
            cpus = 1
            memory = 1500.MB
        }
        withName: create_IndelCandidate_SAMtools {
            cpus = 1
            memory = 1500.MB
        }
        withName: call_sIndel_Manta {
            cpus = 2
        }
        withName: call_sSNV_Strelka2 {
            cpus = 2
        }
    }
    withName: plot_VennDiagram_R {
        cpus = 1
    }
    withName: concat_VCFs_BCFtools {
        cpus = 1
    }
}