.travis.yml

sudo: required
dist: trusty

language: generic

env:
  - BCBIO_DOCKER_PRIVILEGED=True

before_install:
  # Temporal fix for networking problem: https://github.com/travis-ci/travis-ci/issues/1484
  - echo "127.0.1.1 "`hostname` | sudo tee /etc/hosts
  # Get and install anaconda for custom Python installation
  - wget http://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh
  - bash Miniconda-latest-Linux-x86_64.sh -b -p ~/install/bcbio-vm/anaconda

install:
  # Install bcbio-nextgen and bcbio-nextgen-vm
  - export PATH=~/install/bcbio-vm/anaconda/bin/:$PATH
  - conda install --yes -c bioconda -c r bcbio-nextgen-vm -q
  # Get docker container
  - bcbio_vm.py --datadir=${TRAVIS_BUILD_DIR}/tests/data install --tools
  # Update to bcbio-nextgen latest code within the container
  - bcbio_vm.py devel setup_install
  - pip install cwl_runner

script:
  - cd tests
  - bash run_tests.sh docker
  - bash run_tests.sh docker_ipython

notifications:
    email: false
    slack:
        secure: LztOFaO6HFB2Pu+zMOhB42MUMdP+AwjHr2l3fDZtQk8uMsKZ/XcpDhnGJii39VbkPUyN5yT2r42hJzL/s+2MX6g8zS3wsYh7lJN9XC7483tmzlO66yo/OTQ3xC9r0TmR/O3whDEKVj+kroOc7MMltLNwIyEIpFXe5Od8WFrd2Sg=