forked from pyEudetAnalysis/pyEudetAnalysis
-
Notifications
You must be signed in to change notification settings - Fork 0
/
Copy pathLaunchBatchOctober2013.py
171 lines (121 loc) · 6.37 KB
/
LaunchBatchOctober2013.py
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
import os
from os import listdir
from os import walk
import time,os.path
import re
from optparse import OptionParser
parser = OptionParser()
parser.add_option("-s", "--step",
help="step (Reco of Analysis)", dest="STEP")
(options, args) = parser.parse_args()
if(options.STEP) :
if(options.STEP=="Reco"):
print "Launching Batch for Reconstruction"
elif(options.STEP=="Analysis"):
print "Launching Batch for Analysis"
else :
print "Please provide a step to perform (Reco or Analysis)"
parser.print_help()
exit()
def FetchRuns(folder):
runs = []
for (dirpath, dirnames, filenames) in walk(folder):
for file in filenames :
if (file.find("tbtrack")>=0):
print "found file %s"%file
tmp = int(''.join(x for x in file if x.isdigit()))
runs.append(tmp)
break
return runs
# Important folders for the analysis (input, output, plots)
data_folder = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_October2013_results/tbtrack"
result_folder = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_October2013_results/pyEudetAnalysis_plots"
LogFolder = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_October2013_results/pyEudetAnalysis_plots/launch/Logs"
pyEudetFolder = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_October2013_results/pyEudetNtuples"
Alignement_file = ""
# Establish list of processable runs in data folder folder
runs=FetchRuns(data_folder)
# You Can filter the runs to process like this
runs = [x for x in runs if ( (x in range(1005,1049))]
## 1) Generate range for your data set
#run_B04_W0110_90deg_bias_scan = range(48,67)
#run_A06_W0110_90deg_bias_scan = range(96,154)
#run_L05_W0125_90deg_bias_scan = range(155,184)
#
##2) Filter only to keep run in the range you want
#runs = [x for x in runs if ((x in run_B04_W0110_90deg_bias_scan ) or (x in run_A06_W0110_90deg_bias_scan) or (x in run_L05_W0125_90deg_bias_scan) )]
print "launching batch for Runs : "
print runs
#Queue Selection
queue = "8nh"
if(options.STEP=="Reco"):
queue = "8nh"
elif(options.STEP=="Analysis"):
queue = "1nh"
print "using queue %s"%queue
# Create space for your batch files and logs
os.system("mkdir %s/launch"%result_folder)
launch_folder = "%s/launch"%result_folder
print "Writing Batch Files to %s"%launch_folder
# Build launch scripts
logs = []
batch = []
if(options.STEP=="Reco"):
method_names = ["QWeighted"]
for method in method_names :
for run in runs :
filename="%s/Batch_%s_Run%i.sh"%(launch_folder,method,run)
subLogFolder = "%s/Run%i_%s"%(LogFolder,run,method)
f=open(filename,'w')
f.write("cd /afs/cern.ch/user/m/mbenoit/workspace/pyEudetAna \n")
f.write("source setup_CERN.sh \n")
if run in range(48,67) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run48.txt"
f.write("python pyEudetReconstructionOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,data_folder,pyEudetFolder,Alignement_file,0.05))
batch.append(filename)
logs.append(subLogFolder)
elif run in range(96,154) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run130.txt"
f.write("python pyEudetReconstructionOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,data_folder,pyEudetFolder,Alignement_file,0.02))
batch.append(filename)
logs.append(subLogFolder)
elif run in range(155,184) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run170.txt"
f.write("python pyEudetReconstructionOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,data_folder,pyEudetFolder,Alignement_file,0.05))
batch.append(filename)
logs.append(subLogFolder)
else :
print "No alignment for run %i"%run
os.system("chmod u+rwx %s"%filename)
if(options.STEP=="Analysis"):
method_names = ["QWeighted","maxTOT","DigitalCentroid","EtaCorrection"]
for method in method_names :
for run in runs :
filename="%s/Batch_%s_Run%i.sh"%(launch_folder,method,run)
subLogFolder = "%s/Run%i_%s"%(LogFolder,run,method)
f=open(filename,'w')
f.write("cd /afs/cern.ch/user/m/mbenoit/workspace/pyEudetAna \n")
f.write("source setup_CERN.sh \n")
if run in range(48,67) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run48.txt"
f.write("python pyEudetAnalysisOnly.py -r %i -m %s -d %s -o %s -a %s -e %f \n"%(run,method,pyEudetFolder,result_folder,Alignement_file,0.1))
batch.append(filename)
logs.append(subLogFolder)
elif run in range(96,154) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run130.txt"
f.write("python pyEudetAnalysisOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,pyEudetFolder,result_folder,Alignement_file,0.1))
batch.append(filename)
logs.append(subLogFolder)
elif run in range(155,184) :
Alignement_file = "/afs/cern.ch/eng/clic/data/DESY_TB_DATA_19-30-08-2013_results/pyEudetAnalysis_plots/Alignment/Alignment_Run170.txt"
f.write("python pyEudetAnalysisOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,pyEudetFolder,result_folder,Alignement_file,0.1))
batch.append(filename)
logs.append(subLogFolder)
else :
print "No alignment for run %i"%run
os.system("chmod u+rwx %s"%filename)
# Launch the batch to lxbatch
for i,job in enumerate(batch) :
print "Launching %s, STDOUT at %s"%(job,logs[i])
os.system("mkdir %s"%logs[i])
os.system("bsub -o %s/STDOUT -q %s %s"%(logs[i],queue,job))