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LaunchBatchAugust2013.py
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import os
from os import listdir
from os import walk
import time,os.path
import re
from optparse import OptionParser
parser = OptionParser()
parser.add_option("-s", "--step",
help="step (Reco of Analysis)", dest="STEP")
(options, args) = parser.parse_args()
if(options.STEP) :
if(options.STEP=="Alignment"):
print "Launching Batch for Alignment"
elif(options.STEP=="Reco"):
print "Launching Batch for Reconstruction"
elif(options.STEP=="Analysis"):
print "Launching Batch for Analysis"
else :
print "Please provide a step to perform (Reco or Analysis)"
parser.print_help()
exit()
def FetchRuns(folder):
runs = []
for (dirpath, dirnames, filenames) in walk(folder):
for file in filenames :
if (file.find("tbtrack")>=0):
print "found file %s"%file
tmp = int(''.join(x for x in file if x.isdigit()))
runs.append(tmp)
break
return runs
# Important folders for the analysis (input, output, plots)
#data_folder = "/afs/cern.ch/eng/clic/TBData/DESY_TB_DATA_August2013_results/tbtrack"
#result_folder = "/afs/cern.ch/eng/clic/TBData/DESY_TB_DATA_August2013_results/pyEudetAnalysis_plots"
#LogFolder = "/afs/cern.ch/eng/clic/TBData/DESY_TB_DATA_August2013_results/pyEudetAnalysis_plots/launch/Logs"
#pyEudetFolder = "/afs/cern.ch/eng/clic/TBData/DESY_TB_DATA_August2013_results/pyEudetNtuples"
#Alignement_file = ""
#########################################################################
# Establish list of processable runs in data folder folder
#runs=FetchRuns(data_folder)
#runs=range(1,2)
#########################################################################
#runs = range(2032,2043)
#runs = range(48,52) + range(97,99) + range(150,154) + range(314,333) +range(353,388) +range(390,399)+[465,466,473,474]
# You Can filter the runs to process like this
#runs = [x for x in runs if ( (x in range(1005,1049))]
## 1) Generate range for your data set
#run_B04_W0110_90deg_bias_scan = range(48,67)
#run_A06_W0110_90deg_bias_scan = range(96,154)
#run_L05_W0125_90deg_bias_scan = range(155,184)
#
##2) Filter only to keep run in the range you want
#runs = [x for x in runs if ((x in run_B04_W0110_90deg_bias_scan ) or (x in run_A06_W0110_90deg_bias_scan) or (x in run_L05_W0125_90deg_bias_scan) )]
#########################################################################
#B04-W0110
runs = [30,38,39,43,45,48,49,50,51,52,53,54,55,56,57,58,59] + range(413,421) + range(444,467)
data_folder = "/afs/cern.ch/eng/clic/TBData/B04-W0110_Results/tbtrack"
result_folder = "/afs/cern.ch/eng/clic/TBData/B04-W0110_Results/pyEudetPlots"
LogFolder = "/afs/cern.ch/eng/clic/TBData/B04-W0110_Results/pyEudetPlots/launch/Logs"
pyEudetFolder = "/afs/cern.ch/eng/clic/TBData/B04-W0110_Results/pyEudetNTuples"
Alignement_file = ""
#A06-W0110
runs = range(96,143)
data_folder = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/tbtrack"
result_folder = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/pyEudetPlots"
LogFolder = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/pyEudetPlots/launch/Logs"
pyEudetFolder = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/pyEudetNTuples"
Alignement_file = ""
print "launching batch for Runs : "
print runs
#Queue Selection
queue = "8nh"
if(options.STEP=="Alignment"):
queue = "1nd"
elif(options.STEP=="Reco"):
queue = "1nd"
elif(options.STEP=="Analysis"):
queue = "1nd"
print "using queue %s"%queue
# Create space for your batch files and logs
os.system("mkdir %s/launch"%result_folder)
launch_folder = "%s/launch"%result_folder
print "Writing Batch Files to %s"%launch_folder
# Build launch scripts
logs = []
batch = []
if(options.STEP=="Alignment"):
method_names = ["QWeighted"]
for method in method_names :
for run in runs :
filename="%s/Batch_%s_Run%i.sh"%(launch_folder,method,run)
subLogFolder = "%s/Run%i_%s"%(LogFolder,run,method)
f=open(filename,'w')
f.write("cd /afs/cern.ch/user/m/mbenoit/workspace/pyEudetAna/trunk \n")
f.write("source setup_CERN.sh \n")
Alignement_file = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/Alignment/Alignment_Run%i.txt"%run
f.write("python ComputeAlignment.py -r %i -m %s -d %s -o %s -a %s -e %f -n %i\n"%(run,method,data_folder,pyEudetFolder,Alignement_file,0.05,15000))
batch.append(filename)
logs.append(subLogFolder)
os.system("chmod u+rwx %s"%filename)
elif(options.STEP=="Reco"):
method_names = ["QWeighted"]
for method in method_names :
for run in runs :
filename="%s/Batch_%s_Run%i.sh"%(launch_folder,method,run)
subLogFolder = "%s/Run%i_%s"%(LogFolder,run,method)
f=open(filename,'w')
f.write("cd /afs/cern.ch/user/m/mbenoit/workspace/pyEudetAna/trunk \n")
f.write("source setup_CERN.sh \n")
Alignement_file = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/Alignment/Alignment_Run%i.txt"%run
f.write("python pyEudetReconstructionOnly.py -r %i -m %s -d %s -o %s -a %s -e %f\n"%(run,method,data_folder,pyEudetFolder,Alignement_file,0.05))
batch.append(filename)
logs.append(subLogFolder)
os.system("chmod u+rwx %s"%filename)
if(options.STEP=="Analysis"):
method_names = ["QWeighted","maxTOT","DigitalCentroid","EtaCorrection"]
for method in method_names :
for run in runs :
filename="%s/Batch_%s_Run%i.sh"%(launch_folder,method,run)
subLogFolder = "%s/Run%i_%s"%(LogFolder,run,method)
f=open(filename,'w')
f.write("cd /afs/cern.ch/user/m/mbenoit/workspace/pyEudetAna/trunk \n")
f.write("source setup_CERN.sh \n")
Alignement_file = "/afs/cern.ch/eng/clic/TBData/A06-W0110_Results/Alignment/Alignment_Run%i.txt"%run
f.write("python pyEudetAnalysisOnly.py -r %i -m %s -d %s -o %s -a %s -e %f \n"%(run,method,pyEudetFolder,result_folder,Alignement_file,0.1))
batch.append(filename)
logs.append(subLogFolder)
os.system("chmod u+rwx %s"%filename)
# Launch the batch to lxbatch
for i,job in enumerate(batch) :
print "Launching %s, STDOUT at %s"%(job,logs[i])
os.system("mkdir %s"%logs[i])
os.system("bsub -o %s/STDOUT -q %s %s"%(logs[i],queue,job))