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refactoring
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Diff for: ‎.gitignore

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# settings
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.metadata
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.recommenders
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TODOs.txt

Diff for: ‎cloudy/.classpath

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<?xml version="1.0" encoding="UTF-8"?>
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<classpath>
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<classpathentry kind="src" path="src"/>
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<classpathentry kind="src" path="resources"/>
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.7">
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<attributes>
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<attribute name="org.eclipse.jdt.launching.CLASSPATH_ATTR_LIBRARY_PATH_ENTRY" value="cloudy/src/matchings"/>
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</attributes>
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</classpathentry>
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<classpathentry kind="lib" path="lib/jgrapht-jdk1.6.jar"/>
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<classpathentry kind="lib" path="lib/jgraph.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/jwnl-1.3.3.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-maxent-3.0.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-tools-1.5.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-uima-1.5.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/core.jar"/>
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<classpathentry kind="lib" path="lib/lucene-analyzers-common-4.2.1.jar"/>
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<classpathentry kind="lib" path="lib/lucene-core-4.2.1.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-anim.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-awt-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-bridge.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-codec.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-css.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-dom.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-ext.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-extension.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-gui-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-gvt.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-parser.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-rasterizer.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-script.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-slideshow.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-squiggle.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svg-dom.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svggen.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svgpp.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-swing.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-transcoder.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-ttf2svg.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-xml.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/js.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/pdf-transcoder.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xalan-2.6.0.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xerces_2_5_0.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xml-apis-ext.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xml-apis.jar"/>
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<classpathentry kind="lib" path="lib/ws4j-1.0.1.jar"/>
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<classpathentry kind="lib" path="lib/kstem-3.4.jar"/>
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<classpathentry kind="lib" path="lib/pdfbox-1.8.2.jar"/>
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<classpathentry kind="lib" path="lib/fontbox-1.8.2.jar"/>
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<classpathentry kind="lib" path="lib/javaml-0.1.7.jar"/>
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<classpathentry kind="lib" path="lib/jsoup-1.7.2.jar"/>
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<classpathentry kind="lib" path="lib/org.json.jar"/>
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<classpathentry kind="lib" path="lib/sistanlp-research-assembly-1.0-SNAPSHOT.jar"/>
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<classpathentry kind="output" path="bin"/>
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</classpath>
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<?xml version="1.0" encoding="UTF-8"?>
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<classpath>
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<classpathentry kind="src" path="src"/>
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<classpathentry kind="src" path="resources"/>
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<classpathentry kind="lib" path="lib/jgrapht-jdk1.6.jar"/>
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<classpathentry kind="lib" path="lib/jgraph.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/jwnl-1.3.3.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-maxent-3.0.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-tools-1.5.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/apache-opennlp-1.5.2-incubating/opennlp-uima-1.5.2-incubating.jar"/>
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<classpathentry kind="lib" path="lib/core.jar"/>
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<classpathentry kind="lib" path="lib/lucene-analyzers-common-4.2.1.jar"/>
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<classpathentry kind="lib" path="lib/lucene-core-4.2.1.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-anim.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-awt-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-bridge.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-codec.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-css.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-dom.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-ext.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-extension.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-gui-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-gvt.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-parser.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-rasterizer.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-script.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-slideshow.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-squiggle.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svg-dom.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svggen.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-svgpp.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-swing.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-transcoder.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-ttf2svg.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-util.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik-xml.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/batik.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/js.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/pdf-transcoder.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xalan-2.6.0.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xerces_2_5_0.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xml-apis-ext.jar"/>
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<classpathentry kind="lib" path="lib/batik-1.7/xml-apis.jar"/>
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<classpathentry kind="lib" path="lib/ws4j-1.0.1.jar"/>
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<classpathentry kind="lib" path="lib/kstem-3.4.jar"/>
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<classpathentry kind="lib" path="lib/pdfbox-1.8.2.jar"/>
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<classpathentry kind="lib" path="lib/fontbox-1.8.2.jar"/>
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<classpathentry kind="lib" path="lib/javaml-0.1.7.jar"/>
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<classpathentry kind="lib" path="lib/jsoup-1.7.2.jar"/>
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<classpathentry kind="lib" path="lib/org.json.jar"/>
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<classpathentry kind="lib" path="lib/sistanlp-research-assembly-1.0-SNAPSHOT.jar"/>
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<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
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<classpathentry kind="output" path="bin"/>
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</classpath>

Diff for: ‎cloudy/src/edu/cloudy/utils/BoundingBoxGenerator.java renamed to ‎cloudy/src/edu/cloudy/geom/BoundingBoxGenerator.java

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package edu.cloudy.utils;
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package edu.cloudy.geom;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.utils.FontUtils;
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public class BoundingBoxGenerator
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{

Diff for: ‎cloudy/src/edu/cloudy/utils/GeometryUtils.java renamed to ‎cloudy/src/edu/cloudy/geom/GeometryUtils.java

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package edu.cloudy.utils;
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package edu.cloudy.geom;
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import java.util.ArrayList;
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import java.util.Arrays;

Diff for: ‎cloudy/src/edu/cloudy/utils/SWCPoint.java renamed to ‎cloudy/src/edu/cloudy/geom/SWCPoint.java

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package edu.cloudy.utils;
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import java.util.Random;
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Diff for: ‎cloudy/src/edu/cloudy/utils/SWCRectangle.java renamed to ‎cloudy/src/edu/cloudy/geom/SWCRectangle.java

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package edu.cloudy.utils;
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/**
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* @author spupyrev

Diff for: ‎cloudy/src/edu/cloudy/layout/BaseLayoutAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.BoundingBoxGenerator;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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import edu.cloudy.utils.BoundingBoxGenerator;
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import java.util.HashMap;
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Diff for: ‎cloudy/src/edu/cloudy/layout/ContextPreservingAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.GeometryUtils;
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import edu.cloudy.layout.overlaps.ForceDirectedOverlapRemoval;
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import edu.cloudy.layout.overlaps.ForceDirectedUniformity;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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Diff for: ‎cloudy/src/edu/cloudy/layout/CycleCoverAlgo.java

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import edu.cloudy.graph.Edge;
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Diff for: ‎cloudy/src/edu/cloudy/layout/InflateAndPushAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.BoundingBoxGenerator;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.layout.overlaps.ForceDirectedOverlapRemoval;
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import edu.cloudy.layout.overlaps.ForceDirectedUniformity;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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Diff for: ‎cloudy/src/edu/cloudy/layout/LayoutAlgo.java

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package edu.cloudy.layout;
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public interface LayoutAlgo
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{

Diff for: ‎cloudy/src/edu/cloudy/layout/MDSAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.layout.mds.DistanceScaling;
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import edu.cloudy.layout.overlaps.ForceDirectedOverlapRemoval;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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Diff for: ‎cloudy/src/edu/cloudy/layout/MDSWithFDPackingAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCPoint;
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import edu.cloudy.layout.overlaps.ForceDirectedOverlapRemoval;
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import edu.cloudy.layout.overlaps.ForceDirectedUniformity;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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import edu.cloudy.utils.Logger;
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Diff for: ‎cloudy/src/edu/cloudy/layout/PackingCostCalculator.java

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package edu.cloudy.layout;
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/**
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Diff for: ‎cloudy/src/edu/cloudy/layout/SeamCarvingAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCPoint;
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import edu.cloudy.layout.overlaps.ForceDirectedOverlapRemoval;
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import edu.cloudy.layout.overlaps.ForceDirectedUniformity;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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Diff for: ‎cloudy/src/edu/cloudy/layout/SingleCycleAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.nlp.WordPair;
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import java.util.List;

Diff for: ‎cloudy/src/edu/cloudy/layout/SinglePathAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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import edu.cloudy.utils.Logger;
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Diff for: ‎cloudy/src/edu/cloudy/layout/SingleStarAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.graph.Edge;
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import edu.cloudy.graph.Vertex;
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import edu.cloudy.graph.WordGraph;
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Diff for: ‎cloudy/src/edu/cloudy/layout/SpiralCycleAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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Diff for: ‎cloudy/src/edu/cloudy/layout/StarForestAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.graph.Edge;
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import edu.cloudy.graph.Vertex;
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import edu.cloudy.graph.WordGraph;
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import edu.cloudy.layout.packing.WordPlacer;
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import edu.cloudy.nlp.Word;
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Diff for: ‎cloudy/src/edu/cloudy/layout/WordleAlgo.java

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package edu.cloudy.layout;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.nlp.WordPair;
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import java.util.Collections;

Diff for: ‎cloudy/src/edu/cloudy/layout/overlaps/ForceDirectedOverlapRemoval.java

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package edu.cloudy.layout.overlaps;
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import edu.cloudy.geom.SWCPoint;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import java.util.List;
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import java.util.Map;

Diff for: ‎cloudy/src/edu/cloudy/layout/overlaps/ForceDirectedPacking.java

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import java.util.List;
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import java.util.Map;
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import edu.cloudy.geom.SWCPoint;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.utils.SWCPoint;
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import edu.cloudy.utils.SWCRectangle;
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/**
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* @author spupyrev

Diff for: ‎cloudy/src/edu/cloudy/layout/overlaps/ForceDirectedUniformity.java

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@@ -1,8 +1,8 @@
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package edu.cloudy.layout.overlaps;
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3+
import edu.cloudy.geom.SWCPoint;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.utils.SWCPoint;
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import edu.cloudy.utils.SWCRectangle;
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import java.util.List;
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import java.util.Map;

Diff for: ‎cloudy/src/edu/cloudy/layout/overlaps/GreedyOverlapRemoval.java

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package edu.cloudy.layout.overlaps;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.utils.SWCRectangle;
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import java.util.List;
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import java.util.Map;

Diff for: ‎cloudy/src/edu/cloudy/layout/overlaps/OverlapRemoval.java

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@@ -1,7 +1,7 @@
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package edu.cloudy.layout.overlaps;
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import edu.cloudy.geom.SWCRectangle;
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import edu.cloudy.nlp.Word;
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import edu.cloudy.utils.SWCRectangle;
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import java.util.List;
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import java.util.Map;

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