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ChangeLog
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2015-02-20 William A. Perkins <[email protected]>
* block_initialization.f90 (initialize): initialize scalars with
species-specific initial value
* scalar_solve.f90 (scalar_solve): force scalar solution in dead
cells
* scalars_source.f90 (scalar_source_read): add "INITIAL" keyword
to specify initial concentration
* plot_cgns.f90 (plot_cgns_setup, plot_cgns_write)
(plot_cgns_file_close): close and reopen CGNS output between
output time steps to preserve HDF-based integrity
2015-01-13 William A. Perkins <[email protected]>
* scalar_solve.f90 (apply_scalar_bc, scalar_solve): implement left
bank concentration BC's
2015-01-06 William A. Perkins <[email protected]>
* test/transport/mixing/Makefile: make parallel
* plot_cgns.f90 (plot_cgns_write): incorrect output of sediment
bed mass per unit area; incorrect direction for particulate bed
exchange
* scalars_source.f90 (scalar_source_post_timestep): particulate
bed exchange variable needed putting
2014-08-14 William A. Perkins <[email protected]>
* test/transport/1d-analytic-1blk: make parallel and change
picture to use gage data
* test/transport/pointsource: make parallel and update so pictures
can be made from CGNS output
* test/transport/mixing: make parallel and update so pictures can
be made from CGNS output
2014-06-30 William A. Perkins <[email protected]>
* bed.f90 (bed_particulate_exchange, bed_sediment_exchange): only
report negative values when they are "bad"
2014-06-17 William A. Perkins <[email protected]>
* mass2_parallel.f90 (output): only print the scalar mass balance
if there is one
2014-06-16 William A. Perkins <[email protected]>
* scalar_solve.f90 (transport_precalc): call to bedshear() no
longer necessary
* bed.f90 (bed_initialize): remove extraneous put
* hydro_solve.f90 (hydro): call block_hydro_update_bc() which
contains all the stuff that used to be here
* block_hydro_bc.f90 (block_hydro_update_bc): add routine that
collects necessary tasks to prepare for a hydro iteration (BC,
dead cells, etc.)
2014-06-13 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write): used wrong index for collecting
particulate
* bed_var.f90 (bed_var_allocate): initialize %slices
* bed_functions.f90 (bed_post_timestep): use bed_put()
* bed.f90 (bed_put): put pore flux for all species
* gage_output_module.f90 (gage_print_text): particulate bed mass
was incorrect
2014-06-10 William A. Perkins <[email protected]>
* scalar_solve.f90 (transport_precalc): need to compute bedshear
* plot_cgns.f90 (plot_cgns_write): output some bed variables; more
needed
* particulate_source.f90 (part_bed_exch, part_dissolve_bed_exch):
enable the old calculations
* mass2_parallel.f90 (update): turn bed accounting back on
* hydro_solve.f90: add some GA after gets
* hotstart.f90: add some GA after gets
* block_parallel.f90 (block_module): require an index for the
variable
* block_initialization.f90: add some GA sync's after gets
* bed_functions.f90 (bed_post_timestep): add
* Makefile.am: adjust some object/module dependencies
2014-06-09 William A. Perkins <[email protected]>
* sediment_source.f90 (sediment_erosion): turn erosion on
(sediment_source_term): deposition and erosion rates for output
are not set here
2014-06-08 William A. Perkins <[email protected]>
* bed.f90 (bed_collect): added
2014-05-08 William A. Perkins <[email protected]>
* hydro_solve.f90 (depth_solve): initialize mass_source each call
and set mass_source to zero in dead cells
* block_hydro.f90 (block_mass_source_sum): only count locally
owned mass source
* mass_source_output.f90 (mass_file_setup, mass_print)
(mass_file_close): only write from process zero
2014-05-07 William A. Perkins <[email protected]>
* transport_only_module.f90 (transport_only_check): do a better
check of time range in transport only solutions
* scalars_module.f90 (allocate_scalarblock_components): allocate
srcflux
* scalar_solve.f90 (default_scalar_bc): initialize srcconc and
srcflux
(apply_scalar_bc): new "IN SOURCE FLUX" condition recognized
(apply_scalar_source): apply new "IN SOURCE FLUX" condition
2014-05-01 William A. Perkins <[email protected]>
* scalar_solve.f90 (apply_scalar_bc, apply_scalar_source): scalar
concentration conversion was not applied for SOURCE BCs
2014-04-25 William A. Perkins <[email protected]>
* plot_output.f90 (plot_print): compute velocity shift before diag
* block_hydro_bc.f90 (block_compute_bc_flux): do not compute areas
for 'IN' BCs
(apply_hydro_bc): (re)implement IN SOURCE/SINK BC; this
implementation requires that the area be solely owned by a single
process; an attempt to warn the user is made if that condition is
not met.
* hydro_bc.f90 (read_bcspecs): fix the way FLUX conditions
allocate space for area (bank conditions only, still not adequate
for internal)
* scalar_bc.f90 (set_scalar_area): add
(read_scalar_bcspecs): recognize SOURCE BC specifications
* scalar_solve.f90 (apply_scalar_bc, apply_scalar_source):
(re)implement SOURCE scalar BC's
* scalars_module.f90 (allocate_scalarblock_components): declare
and allocate an array for SOURCE concentrations
2014-04-03 William A. Perkins <[email protected]>
* hotstart.f90 (write_restart): a GA sync was necessary to avoid a
race
* block_initialization.f90 (block_initialization): all entries in
a character parameter array must be the same size?
* mass2_parallel.f90 (banner): make work with PETSc 3.4.4
* solver_petsc.F90: changes needed to make work with PETSc 3.4.4;
not sure if earlier PETSc versions work anymore
2014-03-26 William A. Perkins <[email protected]>
* test/flow/spur-dike-1: make plots work
* test/temperature/pond: make plots work
* test/transport/skew30: update configuration so it runs
2013-02-12 William A. Perkins <[email protected]>
* test/flow/Rodi/Makefile (NPROC): parallelize test
* test/flow/180bend/Makefile (MESH): use the finer mesh
2012-11-21 William A. Perkins <[email protected]>
* test/flow/180bend: parallelize the test and add some pictures
* test/benchmark/jda/jda-cgns.lay: update
* test/benchmark/jda/Makefile (MPIRUN): make parallel
2012-08-08 William A. Perkins <[email protected]>
* scripts/dewaterred.py (Block.writefld): convert the array to
floating point before writing it
2012-03-05 William A Perkins <[email protected]>
* scripts/dewaterred.py: add --begin and --end options to limit
the time period.
2012-03-01 William A Perkins <[email protected]>
* scripts/dewaterred.py: only open the CGNS file MODE_MODIFY if
it's to be bodified
2012-02-29 William A. Perkins <[email protected]>
* scripts/dewaterred.py: add script to do dewatered and entrapped
area calculations; use numarray instead of Numeric;
* scripts/mass2_setup.py: add a script to set up VisIt to view
MASS2 output in a nice way
2011-12-19 William A. Perkins <[email protected]>
* block_grid.f90 (block_gridplot): #ifdef around the actual file
operations, so block variable reductions can be performed with
output
* plot_cgns.f90: #ifdef around the actual file operations, so
block variable reductions can be performed with output
* hotstart.f90 (restart_write_var, write_restart): #ifdef around
the actual file operations, so block variable reductions can be
performed with output
2011-12-05 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write): make water surface elevation a
default output, not diag
2011-11-28 William A. Perkins <[email protected]>
* test/temperature/pond/scalar_source.dat: change exchange
coefficients to see if it makes any difference
* energy_flux_module.f90: the various tunable coefficients are now
externally and passed in; this is now identical to the code in
MASS1
* temperature_source.f90 (temperature_source): add exchange
coefficients to temperature_source_rec
(temperature_parse_options): parse exchange coefficients
(temperature_source_term): use exchange coefficients
* block_hydro.f90 (velocity_shift): owned window indexes were
incorrect -- fixed 'em
2011-11-21 William A. Perkins <[email protected]>
* mass2_parallel.f90 (mass2_parallel): select number of digits in
output file names based on total number of processors
2011-11-07 William A Perkins <[email protected]>
* hydro_solve.f90 (harmonic): try to make faster
(uvel_solve, vvel_solve): reduce the number of calls to harmonic()
(linear_friction): use c*c instead of c**2; don't check depth
* solver_petsc.F90 (solver_global_index): return -1 if the
specified i, j are outside the global window
(solver_map_indexes): create an index map
(solver_initialize_block): use solver_map_indexes instead of a
VecScatter
(solver): use mapped global indexes
2011-11-01 William A. Perkins <[email protected]>
* solver_petsc.F90 (solver_global_index): check i and j to make
sure they're in range; if not return a bogus index
(solver_map_indexes): added; build an array of PETSc indexes from
MASS2 i and j indexes
(solver_initialize_block): do not create a VecScatter, map indexes
instead
(solver): use mapped indexes for assembly, do not use a VecScatter
to get solution
* block_hydro_bc.f90 (apply_hydro_bc): indexes used to set
SOURCE/SINK BC's were exceeding local boundaries
2011-10-20 William A. Perkins <[email protected]>
* scalar_solve.f90 (transport_precalc, scalar_solve): avoid the
use of block_owns()
* solver_petsc.F90 (solver): insert values for an entire row of
the matrix instead of one value at a time
2011-10-19 William A. Perkins <[email protected]>
* block_grid.f90 (block_read_grid, block_extrap_ghost)
(block_extrap_ghost_corners, block_interp_grid, block_metrics)
(block_plot_geometry): use block_var_sync() instead of ga_sync()
* block_hydro.f90 (velocity_shift, depth_check)
(calc_eddy_viscosity, check_wetdry): use block_var_sync() instead
of ga_sync()
* block_hydro_bc.f90 (block_build_ghost, fillghost): use
block_var_sync() instead of ga_sync()
* block_initialization.f90 (initialize): use block_var_sync()
instead of ga_sync()
* block_parallel.f90 (block_distribution_report): increase digits
for process id in format
* hotstart.f90 (read_hotstart, write_restart): use
block_var_sync() instead of ga_sync()
* hydro_solve.f90 (hydro, uvel_solve, vvel_solve, depth_solve)
(correct_velocity): use block_var_sync() instead of ga_sync()
* mass2_parallel.f90 (update): use block_var_sync() instead of
ga_sync()
* profile_init.f90 (stage_init_file, vel_init, vel_init_file):
use block_var_sync() instead of ga_sync()
* scalar_solve.f90 (scalar_solve): use block_var_sync() instead
of ga_sync()
* scalars_module.f90 (allocate_scalarblock_components): use
block_var_sync() instead of ga_sync()
* block_var.f90 (block_var_sync): hide the use of ga_sync()
2011-10-18 William A Perkins <[email protected]>
* block_hydro.f90 (velocity_shift): avoid the use of block_owns()
* hydro_solve.f90 (hydro, correct_velocity): avoid the use of
block_owns()
* block_hydro.f90 (depth_check, bedshear, calc_eddy_viscosity)
(check_wetdry): avoid the use of block_owns()
2011-10-14 William A. Perkins <[email protected]>
* solver_petsc.F90: add some timers
2011-10-05 William A. Perkins <[email protected]>
* m4/acx_petsc.m4: needed to *add* petsc stuff to $LIBS
* configure.in (ACX_CGNS77): make $FC_CPPFLAG part of $FCFLAGS for
the test
(GA_LIBS): C++ library not needed here
* Makefile.am (AM_FCFLAGS, mass2_LDADD): use new names for CGNS
flags
(SUBDIRS): don't forget the util sub-directory
* m4/ACX_CGNS.m4: recode to make it work
2011-10-04 William A. Perkins <[email protected]>
* missing, install-sh, configure, aclocal.m4, Makefile.in,
util/cart_grid/Makefile.in, util/Makefile.in: added:
keep autotools in version control
* configure.in: modernize initialization; look for MPI F90
compiler; look for GA; look for PETSc
* bootstrap.sh: use F90 macros in time_series/m4
* Makefile.am: make it work for parallel code: only use sources
required by the parallel version; use $(OBJEXT) everywhere;
* m4/acx_petsc.m4: adapted from TE2THYS
* m4/m4_ax_mpi.m4: add from autoconf macro library
2011-09-29 William A. Perkins <[email protected]>
* mass2_parallel.f90 (mass2_parallel): increase limits given to
ma_init()
2011-08-15 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write): output shear always, not just
with diagnostic fields
* Makefile.mpi (PETSC_LIB): use hypre on pe10900
2011-08-09 William A Perkins <[email protected]>
* Makefile.mpi: use a PETSc with Hypre on briareus
2011-08-05 William A Perkins <[email protected]>
* Makefile.mpi: use a PETSc with Hypre on grapes
2011-07-19 William A. Perkins <[email protected]>
* solver_petsc.F90 (solver_initialize_block): report what solver
and pre-conditioner were used.
2011-07-05 William A. Perkins <[email protected]>
* hydro_solve.f90 (depth_solve): put computed mass source after
it's computed
* plot_cgns.f90 (plot_cgns_write): output mass_source with other
flow diagnostics
* Makefile.mpi: minor compilation flag changes
* block_bc_module.f90 (read_scalar_bcspecs): make sure x_start is
initialized
* scalar_bc.f90 (read_scalar_bcspecs): make sure x_start is
initialized
* scalar_solve.f90 (apply_scalar_source): make sure source term is
zero when cell is dead
2011-05-06 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write_bc): write BC's to output
(plot_cgns_link_coord): link to BC's but not to GridMetrics
(plot_cgns_file_setup): write BC's to grid file
(plot_cgns): It appears that a 2D CGNS file is best
2011-04-19 William A. Perkins <[email protected]>
* profile_init.f90: put routines in a module and make it parallel
* block_grid.f90 (block_metrics): need to limit slope computation
to owned cells, but check edges
* Makefile.mpi (mass2_SOURCES): add profile_init.f90
* block_initialization.f90 (initialize): put profile
initialization back in
2011-03-21 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write_grid): completely rework the way
grid dependent data is output
* block_parallel.f90 (block_allocate_size): add slope variable
* block_grid.f90 (block_metrics): compute a slope
* Makefile.mpi (OPTFLAGS): change Intel floating point trap option
2011-03-17 William A. Perkins <[email protected]>
* Makefile.mpi: add some compiler specific flags
* solver_petsc.F90 (solver_initialize): make a "mass2.petscrc"
file if it does not exist
* plot_cgns.f90 (plot_cgns): make output 3D by default
(plot_cgns_file_setup): make sure selected physical dimension is
actually used
* mass2_parallel.f90 (mass2_parallel): call fillghost() after
initialization
* hydro_solve.f90 (hydro): need to parallel get isdry too
* block_hydro_bc.f90 (default_hydro_bc): apply BC's to used cells
not just owned cells
(apply_hydro_bc): do block connections too
(block_ghost_transfer, block_build_one_ghost, block_build_ghost)
(connect_indexes, fillghost, fillghost_hydro): add routines to
assign block connections and ghost cell value transfers
* block_hydro.f90 (velocity_shift): fix typo
* block_grid.f90 (block_metrics): use blk%varbase to get block
index ranges
* block_ghost.f90: no longer needed
2011-02-25 William A. Perkins <[email protected]>
* Makefile.mpi (mass2_SOURCES): add block_ghost.f90 and
realequal.f90
* block_ghost.f90: a new module to do ghost cell stuff
* block_grid.f90 (block_extrap_ghost): do corners elsewhere
* block_hydro_bc.f90 (check_hydro_block_connection): turn block
connection language back on, but don't do match testing
(fillghost): move block connection code around, still doesn't do
anything
* block_parallel.f90 (block_distribution_report): format change
* block_var.f90 (block_var_get_some): added
* mass2_parallel.f90 (mass2_parallel): the parts of read_grid()
need to be here
* realequal.f90: a function to test equality of reals
2011-02-17 William A. Perkins <[email protected]>
* hotstart.f90 (write_restart): make sure "old" values have been
put by all processors before writing restart
* temperature_source.f90 (temperature_source_term): don't use
global t_water, use the t that's passed in
* tdg_source.f90 (tdg_read_param): don't use misc_vars
* scalars_source.f90: turn on temperature and TDG scalars
* met_data_module.f90: globally defined t_water was screwing
things up
* mass2_parallel.f90 (bc_init): read met data if needed
* hotstart.f90: turn on transport input/output
* gage_output_module.f90: turn on gage output for transport
* block_initialization.f90 (initialize): completely reorder
initialization so defaults are always set before a hot start is
read
* Makefile.mpi: add TDG modules
* test/transport/mixing-side/mass2.cfg: add
* test/transport/decay/mass2.cfg: add
* test/temperature/pond/mass2.cfg: add
* test/temperature/pond/mass2_v027.cfg: bring up to date
* test/transport/decay/mass2_v027.cfg: bring up to date
* test/transport/mixing-side/mass2_v027.cfg: bring up to date
2011-02-16 William A. Perkins <[email protected]>
* Makefile.mpi (mass2_SOURCES): add minimal sources to do transport
* plot_cgns.f90 (plot_cgns_write): output (generic only) transport
* plot_output.f90 (plot_print): salinity and baro_press are not
needed here
* scalar_bc.f90 (set_scalar_block_connections): copy to here, but
comment most of it out
* scalar_solve.f90: put subprograms in a module; parallelize BC
application and solving
* mass2_parallel.f90 (mass2_parallel): allocate scalar storage; do
transport
(bc_init): read transport BC's
(update): time step scalar variables
* block_initialization.f90 (initialize): do transport
initialization
* generic_source.f90: comment out bed source stuff
* block_parallel.f90 (block_deallocate): don't deallocate
blk%shear 'cause it a pointer
* scalar_solve.f90:
* scalars_module.f90: reworked to use block_variable to store
concentrations
* scalars_source.f90: working in parallel for generic scalars
only; other kinds commented out
* test/transport/mixing/mass2_v027.base: bring up to date
* test/transport/mixing/mixing.base.lay: use CGNS output instead
of NetCDF
2011-02-08 William A. Perkins <[email protected]>
* test/flow/normal-1blk/Makefile: make config file with correct
name; do not create NetCDF files
* block_hydro.f90 (bedshear): no need to get shear after it's put
* hotstart.f90 (read_hotstart): compiles and runs, but does not
work correctly
* mass2_parallel.f90: move read_grid() to block_grid.f90; do
deallocation
* scalar_bc.f90: compiles, but not tested
2011-02-04 William A. Perkins <[email protected]>
* Makefile.mpi (mass2_SOURCES): add scalar_bc.f90
2011-01-31 William A. Perkins <[email protected]>
* block_parallel.f90 (block_deallocate): some missing arrays
included
* block_initialization.f90 (initialize): read hotstart when called
for
* block_grid.f90 (read_grid): move to here
* hotstart.f90 (read_hotstart): make hot start reading work
* plot_output.f90: only do CGNS output if plot_do_cgns is set
2011-01-24 William A. Perkins <[email protected]>
* mass2_parallel.f90 (mass2_parallel): write hotstart
* hotstart.f90: writing seems to work
* Makefile.mpi: add hotstart.f90
* plot_output.f90: put #include's in subprograms instead of module
to avoid duplicate declarations
* scalar_bc.f90: module for managing scalar boundary conditions
* Makefile.mpi: compile in some of the transport modules
* sediment_source.f90: update to use parallel modules (just
compiling, not working)
* scalars_module.f90: update to use parallel modules (just
compiling, not working)
2011-01-18 William A. Perkins <[email protected]>
* Makefile.mpi: try to make various directories set by host name
* globals.f90 (globals): Intel Fortran does not like an empty
CONTAINS
* mass2_parallel.f90 (mass2_parallel): call ma_init()
* test/wave/falconer/mass2_v027.case3.cfg: update configuration
language
* test/wave/falconer/mass2_v027.case2.cfg: update configuration
language
* test/wave/falconer/mass2_v027.case1.cfg: update configuration
language
* test/wave/falconer/Makefile: mass2_v027.cfg -> mass2.cfg
* test/flow/spur-dike-1/Makefile: mass2_v027.cfg -> mass2.cfg
* Makefile.mpi (FCFLAGS): group flags better
* block_hydro_bc.f90 (apply_hydro_bc): update of star/old values
in wrong place
* block_initialization.f90 (initialize_coeff): array to fill was
chosen too soon
* gage_output_module.f90 (gage_output): remove all netcdf variables
(gage_print_text): better timestamp and elapsed time formatting
* mass2_config.f90 (read_config): set second digits based on
output time step(s)
2011-01-17 William A. Perkins <[email protected]>
* Makefile.mpi: add gage output
* mass2_parallel.f90 (mass2_parallel, output_init, output): turn
on gage output
* gage_output_module.f90: drop netcdf code; make work in parallel
* block_var.f90 (block_var_get_all): block_var_all -> block_var_get_all
* block_parallel.f90 (block_collect): block_var_all -> block_var_get_all
* block_grid.f90 (block_gridplot): block_var_all -> block_var_get_all
2011-01-14 William A. Perkins <[email protected]>
* plot_cgns.f90 (plot_cgns_write): output isdead%p
* mass2_parallel.f90 (output): distribute isdead%p for output
* block_parallel.f90 (block_module): add parallel variable for
isdead%p; remove unused mass source global array
* block_hydro_bc.f90 (block_compute_bc_flux): fix indexing bug
(apply_hydro_bc): make DEAD, WALL, and FLUX conditions parallel
* hydro_solve.f90 (hydro): pre-compute flow areas for "FLUX" bc's
(collectively)
* hydro_bc.f90 (read_bcspecs): allocate space for flow area when
bc kind is "FLUX"
* block_hydro_bc.f90 (block_compute_bc_flux): pre-compute flow
areas for "FLUX" bc's
2011-01-13 William A. Perkins <[email protected]>
* solver_petsc.F90 (solver_initialize): read options from a file
* hydro_solve.f90 (hydro): distribute velocity and depth after
*all* boundary conditions have been processed
* block_initialization.f90 (initialize): old depth needs to be
gotten after it's put; remote values are needed locally
* block_hydro_bc.f90 (apply_hydro_bc): don't distribute adjusted
velocity and depth here; wait until all bc's are processed
* block_hydro.f90 (block_mass_source_sum): comment out debug message
* block_grid.f90 (block_metrics): some of the metrics were not
distributed
2010-12-17 William A. Perkins <[email protected]>
* configure.in: need to call AC_PROG_FC() before AC_PROG_F90()
* table_bc_module.f90 (table_boundary_conditions): increase
maximum number of table columns
2010-04-07 William A. Perkins <[email protected]>
* plot_netcdf.f90 (plot_file_setup_netcdf, plot_print_netcdf): add
new block variables uflux and vflux to output
* plot_cgns.f90 (plot_cgns_write): write uflux and vflux
* global_module_023.f90 (globals, allocate_block_components): add
new block variables uflux and vflux
(velocity_shift): compute p-cell velocities using fluxes instead
of averaging; compute new block variables uflux and vflux
* accumulator.f90 (accumulator, accum_initialize, accum_reset)
(accumulate, accum_calc): add new accumulated variables uflux and
vflux
2010-04-02 William A. Perkins <[email protected]>
* mass2_main_025.f90 (fillghost_hydro): incorrect indexes used for
flux calculations in fine block
* Makefile.am (scalars_source.o): now depends on
misc_vars_module.o
* scalars_source.f90 (scalar_source_read): make it an error to
choose a momentum differencing scheme that takes more ghost cells
than are available
* mass2_main_025.f90 (read_config): make it an error to choose a
momentum differencing scheme that takes more ghost cells than are
available
* mass2.f90 (mass2): close block flux output if used
* mass2_main_025.f90 (output_init,output): optionally output block
flux
(extrap_1_corner): extrapolate z too
2010-04-01 William A. Perkins <[email protected]>
* block_flux_output.f90 (block_flux_print): write block edge areas
too
2010-03-26 William A. Perkins <[email protected]>
* test/flow/normal-sine: channel test with sinusoidal cross
section
* mass2_main_025.f90 (output_init, output): output block flux
report
* mass2.f90 (mass2): close block flux report
* Makefile.am: incorporate block_flux_output module
* block_flux_output.f90: added
2010-02-02 William A. Perkins <[email protected]>
* mass2_main_025.f90 (start_up): allocate inlet_area and
table_input with the maximum block dimension, not the maximum j
dimension.
2010-01-27 William A. Perkins <[email protected]>
* block_bc_module.f90 (set_bc_part): fixed wrong file name in
error messages
2009-07-17 William A. Perkins <[email protected]>
* test/flow/spur-dike-1/streamlines-metric.lay: draw the x-velocity
separation line
* test/flow/another-jump/mass2_v027.cfg: update configuration file
format; switch to MSOU scheme
2009-05-28 William A. Perkins <[email protected]>
* gage_output_module.f90 (gage_file_header, gage_print_text): use
space instead of comma for delimiter so gnuplotting is the same as
BC files
2009-05-27 William A. Perkins <[email protected]>
* gage_output_module.f90 (gage_file_header): added
(gage_print_text): revive text gage output and make default
* test/benchmark/mcn-test/hotstart.bin: updated
* test/benchmark/mcn-test/mass2_v027.base: update for momentum
underrelaxation and discretization method
* test/benchmark/mcn-test/mass2_v027.warmup: update for momentum
underrelaxation and discretization method
* test/benchmark/mcn-test/scalar_bcspecs.dat: block connections
not needed
2009-01-27 William A. Perkins <[email protected]>
* test/benchmark/jda/mass2_v027.run, mass2_v027.warmup: update
eddy viscosity input
* plot_cgns.f90 (plot_cgns): make the CGNS output 2D and transient
(visit now understands it, but not tecplot)
2009-01-23 William A. Perkins <[email protected]>
* hydro_solve.f90 (calc_eddy_viscosity): under relax computed eddy
viscosity
* mass2_main_025.f90 (initialize): bedshear and eddy viscosity
need to be computed for *all* blocks
(read_config): read and check eddy viscosity under relaxation
2009-01-22 William A. Perkins <[email protected]>
* hydro_solve.f90 (calc_eddy_viscosity): under relax computed eddy
viscosity
* plot_netcdf.f90 (plot_file_setup_netcdf, plot_print_netcdf): add
eddy viscosity output
* plot_cgns.f90 (plot_cgns_write): correct eddy viscosity units
* global_module_023.f90 (allocate_block_components): add space for
previous eddy viscosity value
* mass2_main_025.f90 (read_config): add flag for eddy viscosity
calculation
* misc_vars_module.f90 (misc_vars): add eddy viscosity
underrelaxation factor
2009-01-22 William Perkins <[email protected]>
* hydro_solve.f90 (uvel_solve): some of the grid metric
coefficients were not being computed!
2009-01-06 William A. Perkins <[email protected]>
* accumulator.f90 (accumulator): accumulate eddy viscosity too
* global_module_023.f90 (globals): add vonkarmon and
viscosity_water; get rid of some unused variables
* hydro_solve.f90 (harmonic, bedshear): added
(uvel_solve, vvel_solve): use harmonic means to compute face eddy
viscosity
* mass2_main_025.f90 (start_up, buildghost, extrapghost)
(interp_grid, fillghost_scalar, hydro, apply_hydro_bc)
(extrapolate_udepth, extrapolate_vdepth, transport, etc): get
rid of unused variables
(default_hydro_bc): copy eddy viscosity into ghost cells by
default
(hydro): calculate eddy viscosity in the hydro iteration loop
(fillghost_hydro): need to copy eddy viscosity into ghost cells
too
(initialize): calculate eddy viscosity
* misc_vars_module.f90 (misc_vars): add do_calc_eddy flag
* plot_cgns.f90 (plot_cgns_write): use standard CGNS variable
names and eddy viscosity
(plot_cgns_file_close, plot_cgns_close): get rid of unused
variables
* scalar_solve.f90 (bedshear): move to hydro_solve.f90
2008-11-06 William A. Perkins <[email protected]>
* differencing.f90 (differencing): diff_method strings need to be
all the same length for some (stupid) compilers
* test/benchmark/jda/Makefile: hotstart.bin depends on $(MODEL)
* mass2_main_025.f90 (initialize): initialize old old variable values too
(read_hotstart): read old old variable values
(write_restart): write old old variable values
* transport_only_module.f90 (read_restart): read old old variable
values
2008-11-05 William A. Perkins <[email protected]>
* test/benchmark/jda/mass2_v027.run: use MSOU
* test/flow/Rodi/mass2_v027.base: turn off 2nd order time
differencing so SOU spatial differencing works
* test/flow/spur-dike-1/mass2_v027.base: turn off 2nd order time
differencing so SOU spatial differencing works
* test/transport/1d-advection-1blk/Makefile: add MSOU and MUSCL schemes
* test/transport/1d-analytic-2blk/Makefile: add MSOU and MUSCL schemes
* test/transport/skew30-blk: run for multiple differencing schemes
* test/transport/1d-analytic-2blk-side: run for multiple differencing schemes
* test/transport/1d-advection-1blk/Makefile: add MSOU and MUSCL schemes
* test/transport/skew30/Makefile: add MSOU and MUSCL schemes
* test/transport/skew45-blk: run for multiple differencing schemes
* test/transport/skew45/Makefile: add MSOU and MUSCL schemes
* scalar_solve.f90 (scalar_solve): call differ2() instead of
differ()
(default_scalar_bc): fill all ghost cells with something
reasonable
* mass2_main_025.f90 (default_hydro_bc): fill all ghost cells with
something reasonable
* hydro_solve.f90 (vvel_solve, uvel_solve): call differ2() instead
of differ()
* differencing.f90 (msou_limiter, muscl_limiter, differ2): new
routines to implement flux limited methods
(differencing): add MSOU and MUSCL methods
* test/transport/1d-analytic-1blk/Makefile: add MSOU and MUSCL differencing
schemes
* test/flow/Rodi/Makefile: add MSOU and MUSCL differencing
schemes
* test/flow/spur-dike-1/Makefile: add MSOU and MUSCL differencing
schemes
2008-11-03 William A. Perkins <[email protected]>
* test/transport/skew30: run for multiple differencing schemes
2008-10-31 William A. Perkins <[email protected]>
* test/transport/skew45: run for multiple differencing schemes
* test/flow/spur-dike-1: run for multiple differencing schemes
* test/flow/Rodi/Makefile: add SOU differencing case
* test/benchmark/jda/mass2_v027.run: use full SOU instead of CDS
for u/v momentum (which actually runs)
* differencing.f90 (differencing): add second order upwinding (SOU)
* hydro_solve.f90 (uvel_solve, vvel_solve): use coefficients 2
cells away, except at some boundaries
* mass2_main_025.f90 (read_config): correct checking of u/v
momentum differencing method